import javax.swing.JMenuItem;
import javax.swing.JPanel;
import javax.swing.JPopupMenu;
-import javax.swing.SwingUtilities;
import javax.swing.ToolTipManager;
/**
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mousePressed(MouseEvent evt)
{
int x = (evt.getX() / av.getCharWidth()) + av.getStartRes();
min = res;
max = res;
- if (SwingUtilities.isRightMouseButton(evt))
+ if (evt.isPopupTrigger())
{
- JPopupMenu pop = new JPopupMenu();
- if (reveal != null)
+ rightMouseButtonPressed(evt, res);
+ }
+ else
+ {
+ leftMouseButtonPressed(evt, res);
+ }
+ }
+
+ /**
+ * Handles right mouse button press. If pressed in a selected column, opens
+ * context menu for 'Hide Columns'. If pressed on a hidden columns marker,
+ * opens context menu for 'Reveal / Reveal All'. Else does nothing.
+ *
+ * @param evt
+ * @param res
+ */
+ protected void rightMouseButtonPressed(MouseEvent evt, final int res)
+ {
+ JPopupMenu pop = new JPopupMenu();
+ if (reveal != null)
+ {
+ JMenuItem item = new JMenuItem(
+ MessageManager.getString("label.reveal"));
+ item.addActionListener(new ActionListener()
{
- JMenuItem item = new JMenuItem(
- MessageManager.getString("label.reveal"));
- item.addActionListener(new ActionListener()
+ @Override
+ public void actionPerformed(ActionEvent e)
{
- public void actionPerformed(ActionEvent e)
+ av.showColumn(reveal[0]);
+ reveal = null;
+ ap.paintAlignment(true);
+ if (ap.overviewPanel != null)
{
- av.showColumn(reveal[0]);
- reveal = null;
- ap.paintAlignment(true);
- if (ap.overviewPanel != null)
- {
- ap.overviewPanel.updateOverviewImage();
- }
+ ap.overviewPanel.updateOverviewImage();
}
- });
- pop.add(item);
-
- if (av.getColumnSelection().hasHiddenColumns())
- {
- item = new JMenuItem(
- MessageManager.getString("action.reveal_all"));
- item.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- av.showAllHiddenColumns();
- reveal = null;
- ap.paintAlignment(true);
- if (ap.overviewPanel != null)
- {
- ap.overviewPanel.updateOverviewImage();
- }
- }
- });
- pop.add(item);
+ av.sendSelection();
}
- pop.show(this, evt.getX(), evt.getY());
- }
- else if (av.getColumnSelection().contains(res))
+ });
+ pop.add(item);
+
+ if (av.getColumnSelection().hasHiddenColumns())
{
- JMenuItem item = new JMenuItem(
- MessageManager.getString("label.hide_columns"));
+ item = new JMenuItem(MessageManager.getString("action.reveal_all"));
item.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
- av.hideColumns(res, res);
- if (av.getSelectionGroup() != null
- && av.getSelectionGroup().getSize() == av
- .getAlignment().getHeight())
- {
- av.setSelectionGroup(null);
- }
-
+ av.showAllHiddenColumns();
+ reveal = null;
ap.paintAlignment(true);
if (ap.overviewPanel != null)
{
ap.overviewPanel.updateOverviewImage();
}
+ av.sendSelection();
}
});
pop.add(item);
- pop.show(this, evt.getX(), evt.getY());
}
+ pop.show(this, evt.getX(), evt.getY());
}
- else
- // LEFT MOUSE TO SELECT
+ else if (av.getColumnSelection().contains(res))
{
- if (!evt.isControlDown() && !evt.isShiftDown())
+ JMenuItem item = new JMenuItem(
+ MessageManager.getString("label.hide_columns"));
+ item.addActionListener(new ActionListener()
{
- av.getColumnSelection().clear();
- }
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ av.hideColumns(res, res);
+ if (av.getSelectionGroup() != null
+ && av.getSelectionGroup().getSize() == av.getAlignment()
+ .getHeight())
+ {
+ av.setSelectionGroup(null);
+ }
- av.getColumnSelection().addElement(res);
- SequenceGroup sg = new SequenceGroup();
- // try to be as quick as possible
- SequenceI[] iVec = av.getAlignment().getSequencesArray();
- for (int i = 0; i < iVec.length; i++)
- {
- sg.addSequence(iVec[i], false);
- iVec[i] = null;
- }
- iVec = null;
- sg.setStartRes(res);
- sg.setEndRes(res);
+ ap.paintAlignment(true);
+ if (ap.overviewPanel != null)
+ {
+ ap.overviewPanel.updateOverviewImage();
+ }
+ av.sendSelection();
+ }
+ });
+ pop.add(item);
+ pop.show(this, evt.getX(), evt.getY());
+ }
+ }
+
+ /**
+ * Handles left mouse button press
+ *
+ * @param evt
+ * @param res
+ */
+ protected void leftMouseButtonPressed(MouseEvent evt, final int res)
+ {
+ if (!evt.isControlDown() && !evt.isShiftDown())
+ {
+ av.getColumnSelection().clear();
+ }
+
+ av.getColumnSelection().addElement(res);
+ SequenceGroup sg = new SequenceGroup();
+ // try to be as quick as possible
+ SequenceI[] iVec = av.getAlignment().getSequencesArray();
+ for (int i = 0; i < iVec.length; i++)
+ {
+ sg.addSequence(iVec[i], false);
+ iVec[i] = null;
+ }
+ iVec = null;
+ sg.setStartRes(res);
+ sg.setEndRes(res);
- if (evt.isShiftDown())
+ if (evt.isShiftDown())
+ {
+ int min = Math.min(av.getColumnSelection().getMin(), res);
+ int max = Math.max(av.getColumnSelection().getMax(), res);
+ for (int i = min; i < max; i++)
{
- int min = Math.min(av.getColumnSelection().getMin(), res);
- int max = Math.max(av.getColumnSelection().getMax(), res);
- for (int i = min; i < max; i++)
- {
- av.getColumnSelection().addElement(i);
- }
- sg.setStartRes(min);
- sg.setEndRes(max);
+ av.getColumnSelection().addElement(i);
}
- av.setSelectionGroup(sg);
+ sg.setStartRes(min);
+ sg.setEndRes(max);
}
-
+ av.setSelectionGroup(sg);
ap.paintAlignment(false);
av.sendSelection();
}
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mouseReleased(MouseEvent evt)
{
mouseDragging = false;
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mouseDragged(MouseEvent evt)
{
mouseDragging = true;
}
}
+ @Override
public void mouseEntered(MouseEvent evt)
{
if (mouseDragging)
}
}
+ @Override
public void mouseExited(MouseEvent evt)
{
if (mouseDragging)
}
}
+ @Override
public void mouseClicked(MouseEvent evt)
{
}
+ @Override
public void mouseMoved(MouseEvent evt)
{
if (!av.hasHiddenColumns())
* @param g
* DOCUMENT ME!
*/
+ @Override
public void paintComponent(Graphics g)
{
drawScale(g, av.getStartRes(), av.getEndRes(), getWidth(), getHeight());
{
gg.setColor(new Color(220, 0, 0));
- for (int i = 0; i < cs.size(); i++)
+ for (int sel : cs.getSelected())
{
- int sel = cs.columnAt(i);
+ // TODO: JAL-2001 - provide a fast method to list visible selected in a
+ // given range
+
if (av.hasHiddenColumns())
{
if (cs.isVisible(sel))
int scalestartx = (startx / 10) * 10;
+ SequenceI refSeq = av.getAlignment().getSeqrep();
+ int refSp = 0, refEp = -1, refStart = 0, refEnd = -1, refStartI = 0, refEndI = -1;
+ if (refSeq != null)
+ {
+ // find bounds and set origin appopriately
+ // locate first visible position for this sequence
+ int[] refbounds = av.getColumnSelection()
+ .locateVisibleBoundsOfSequence(refSeq);
+
+ refSp = refbounds[0];
+ refEp = refbounds[1];
+ refStart = refbounds[2];
+ refEnd = refbounds[3];
+ refStartI = refbounds[4];
+ refEndI = refbounds[5];
+ scalestartx = refSp + ((scalestartx - refSp) / 10) * 10;
+ }
+
+
+ int widthx = 1 + endx - startx;
+
FontMetrics fm = gg.getFontMetrics(av.getFont());
int y = avCharHeight - fm.getDescent();
- if ((scalestartx % 10) == 0)
+ if (refSeq == null && scalestartx % 10 == 0)
{
scalestartx += 5;
}
String string;
- int maxX = 0;
-
+ int maxX = 0, refN, iadj;
+ // todo: add a 'reference origin column' to set column number relative to
for (int i = scalestartx; i < endx; i += 5)
{
- if ((i % 10) == 0)
+ if (((i - refSp) % 10) == 0)
{
- string = String.valueOf(av.getColumnSelection()
- .adjustForHiddenColumns(i));
+ iadj = av.getColumnSelection().adjustForHiddenColumns(i - 1);
+ if (refSeq == null)
+ {
+ string = String.valueOf(iadj);
+ }
+ else
+ {
+ refN = refSeq.findPosition(iadj);
+ // TODO show bounds if position is a gap
+ // - ie L--R -> "1L|2R" for
+ // marker
+ if (iadj < refStartI)
+ {
+ string = String.valueOf(iadj - refStartI);
+ }
+ else if (iadj > refEndI)
+ {
+ string = "+" + String.valueOf(iadj - refEndI);
+ }
+ else
+ {
+ string = String.valueOf(refN) + refSeq.getCharAt(iadj);
+ }
+ }
if ((i - startx - 1) * avCharWidth > maxX)
{
gg.drawString(string, (i - startx - 1) * avCharWidth, y);
for (int i = 0; i < av.getColumnSelection().getHiddenColumns()
.size(); i++)
{
-
res = av.getColumnSelection().findHiddenRegionPosition(i)
- startx;
- if (res < 0 || res > endx - scalestartx)
+ if (res < 0 || res > widthx)
{
continue;
}
git://source.jalview.org / jalview.git / blobdiff