* @author $author$\r
* @version $Revision$\r
*/\r
-public class ScalePanel extends JPanel\r
+public class ScalePanel extends JPanel implements MouseMotionListener, MouseListener\r
{\r
protected int offy = 4;\r
\r
boolean stretchingGroup = false;\r
int min; //used by mouseDragged to see if user\r
int max; //used by mouseDragged to see if user\r
+ boolean mouseDragging = false;\r
\r
// wants to delete columns\r
public ScalePanel(AlignViewport av, AlignmentPanel ap)\r
this.av = av;\r
this.ap = ap;\r
\r
- addMouseListener(new MouseAdapter()\r
- {\r
- public void mousePressed(MouseEvent evt)\r
- {\r
- doMousePressed(evt);\r
- }\r
-\r
- public void mouseReleased(MouseEvent evt)\r
- {\r
- doMouseReleased(evt);\r
- }\r
- });\r
- addMouseMotionListener(new MouseMotionAdapter()\r
- {\r
- public void mouseDragged(MouseEvent evt)\r
- {\r
- doMouseDragged(evt);\r
- }\r
- });\r
+ addMouseListener(this);\r
+ addMouseMotionListener(this);\r
}\r
\r
/**\r
*\r
* @param evt DOCUMENT ME!\r
*/\r
- public void doMousePressed(MouseEvent evt)\r
+ public void mousePressed(MouseEvent evt)\r
{\r
- int x = evt.getX();\r
- int res = (x / av.getCharWidth()) + av.getStartRes();\r
- SequenceGroup sg = null;\r
+ int x = (evt.getX() / av.getCharWidth()) + av.getStartRes();\r
+ final int res;\r
+\r
+ if(av.hasHiddenColumns)\r
+ res = av.getColumnSelection().adjustForHiddenColumns(x);\r
+ else\r
+ res = x;\r
\r
min = res;\r
max = res;\r
\r
- if (av.getColumnSelection().contains(res))\r
+ /* if(reveal != null && SwingUtilities.isRightMouseButton(evt))\r
+ {\r
+ JPopupMenu pop = new JPopupMenu();\r
+ JMenuItem item = new JMenuItem("Reveal");\r
+ item.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ av.getColumnSelection().revealHiddenColumns(reveal[0], av);\r
+ reveal = null;\r
+ ap.repaint();\r
+ if(ap.overviewPanel != null)\r
+ ap.overviewPanel.updateOverviewImage();\r
+ }\r
+ });\r
+ pop.add(item);\r
+\r
+ if(av.getColumnSelection().hiddenColumns.size()>1)\r
+ {\r
+ item = new JMenuItem("Reveal All");\r
+ item.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ av.getColumnSelection().revealAllHiddenColumns(av);\r
+ reveal = null;\r
+ ap.repaint();\r
+ if(ap.overviewPanel != null)\r
+ ap.overviewPanel.updateOverviewImage();\r
+ }\r
+ });\r
+ pop.add(item);\r
+ }\r
+\r
+ pop.show(this, evt.getX(), evt.getY());\r
+\r
+ }\r
+ else*/\r
+ if (av.getColumnSelection().contains(res))\r
{\r
+ /* if( SwingUtilities.isRightMouseButton(evt))\r
+ {\r
+ JPopupMenu pop = new JPopupMenu();\r
+ JMenuItem item = new JMenuItem("Hide Columns");\r
+ item.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ av.getColumnSelection().hideColumns(res, av);\r
+ ap.repaint();\r
+ if(ap.overviewPanel != null)\r
+ ap.overviewPanel.updateOverviewImage();\r
+ }\r
+ });\r
+ pop.add(item);\r
+ pop.show(this, evt.getX(), evt.getY());\r
+\r
+ }\r
+ else*/\r
+ {\r
av.getColumnSelection().removeElement(res);\r
- ap.annotationPanel.removeEditableColumn(res);\r
+ av.setSelectionGroup(null);\r
+ }\r
}\r
else\r
{\r
av.getColumnSelection().addElement(res);\r
- sg = new SequenceGroup();\r
+ SequenceGroup sg = new SequenceGroup();\r
\r
for (int i = 0; i < av.alignment.getSequences().size(); i++)\r
{\r
\r
sg.setStartRes(res);\r
sg.setEndRes(res);\r
+ av.setSelectionGroup(sg);\r
}\r
\r
- av.setSelectionGroup(sg);\r
+\r
ap.repaint();\r
}\r
\r
*\r
* @param evt DOCUMENT ME!\r
*/\r
- public void doMouseReleased(MouseEvent evt)\r
+ public void mouseReleased(MouseEvent evt)\r
{\r
- int x = evt.getX();\r
- int res = (x / av.getCharWidth()) + av.getStartRes();\r
+ mouseDragging = false;\r
\r
- if (av.getColumnSelection() != null)\r
- {\r
- for (int i = 0; i < av.getColumnSelection().size(); i++)\r
- {\r
- ap.annotationPanel.addEditableColumn(av.getColumnSelection()\r
- .columnAt(i));\r
- }\r
- }\r
+ int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();\r
+\r
+ if(av.hasHiddenColumns)\r
+ res = av.getColumnSelection().adjustForHiddenColumns(res);\r
\r
if (!stretchingGroup)\r
{\r
*\r
* @param evt DOCUMENT ME!\r
*/\r
- public void doMouseDragged(MouseEvent evt)\r
+ public void mouseDragged(MouseEvent evt)\r
{\r
- int x = evt.getX();\r
- int res = (x / av.getCharWidth()) + av.getStartRes();\r
+ mouseDragging = true;\r
+\r
+ int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();\r
+\r
+ if(av.hasHiddenColumns)\r
+ res = av.getColumnSelection().adjustForHiddenColumns(res);\r
\r
if (res < min)\r
{\r
max = res;\r
}\r
\r
+\r
SequenceGroup sg = av.getSelectionGroup();\r
\r
if (sg != null)\r
{\r
sg.setEndRes(res);\r
}\r
- else if (res < sg.getStartRes())\r
+ if (res < sg.getStartRes())\r
{\r
sg.setStartRes(res);\r
}\r
if ((i < sg.getStartRes()) || (i > sg.getEndRes()))\r
{\r
av.getColumnSelection().removeElement(i);\r
- ap.annotationPanel.removeEditableColumn(res);\r
}\r
else\r
{\r
}\r
}\r
\r
+ public void mouseEntered(MouseEvent evt)\r
+ {\r
+ if(mouseDragging)\r
+ ap.seqPanel.scrollCanvas(null);\r
+ }\r
+\r
+ public void mouseExited(MouseEvent evt)\r
+ {\r
+ if(mouseDragging)\r
+ ap.seqPanel.scrollCanvas(evt);\r
+ }\r
+\r
+ public void mouseClicked(MouseEvent evt){}\r
+\r
+ public void mouseMoved(MouseEvent evt)\r
+ {\r
+ if(!av.hasHiddenColumns)\r
+ return;\r
+\r
+ int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();\r
+\r
+ res = av.getColumnSelection().adjustForHiddenColumns(res);\r
+\r
+ reveal = null;\r
+ for(int i=0; i<av.getColumnSelection().getHiddenColumns().size(); i++)\r
+ {\r
+ int [] region = (int[])av.getColumnSelection().getHiddenColumns().elementAt(i);\r
+ if(res+1==region[0] || res-1==region[1])\r
+ {\r
+ reveal = region;\r
+ ToolTipManager.sharedInstance().registerComponent(this);\r
+ this.setToolTipText("Reveal Hidden Columns with Right Mouse Button");\r
+ break;\r
+ }\r
+ else\r
+ this.setToolTipText(null);\r
+\r
+ }\r
+\r
+ repaint();\r
+ }\r
+\r
+ int [] reveal;\r
+\r
/**\r
* DOCUMENT ME!\r
*\r
{\r
Graphics2D gg = (Graphics2D) g;\r
gg.setFont(av.getFont());\r
- gg.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
- RenderingHints.VALUE_ANTIALIAS_ON);\r
+\r
+ if(av.antiAlias)\r
+ gg.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
+ RenderingHints.VALUE_ANTIALIAS_ON);\r
\r
//Fill in the background\r
gg.setColor(Color.white);\r
for (int i = 0; i < cs.size(); i++)\r
{\r
int sel = cs.columnAt(i);\r
+ if(av.hasHiddenColumns)\r
+ sel = av.getColumnSelection().findColumnPosition(sel);\r
\r
if ((sel >= startx) && (sel <= endx))\r
{\r
{\r
if ((i % 10) == 0)\r
{\r
- gg.drawString(String.valueOf(i),\r
+ gg.drawString(String.valueOf(av.getColumnSelection().adjustForHiddenColumns(i)),\r
(i - startx - 1) * av.charWidth, y);\r
gg.drawLine((int) (((i - startx - 1) * av.charWidth) +\r
(av.charWidth / 2)), y + 2,\r
(av.charWidth / 2)), y + (fm.getDescent() * 2));\r
}\r
}\r
+\r
+ if (av.hasHiddenColumns)\r
+ {\r
+ gg.setColor(Color.blue);\r
+ int res;\r
+ for (int i = 0; i < av.getColumnSelection().getHiddenColumns().size(); i++)\r
+ {\r
+ res = av.getColumnSelection().findHiddenRegionPosition( i )-startx;\r
+\r
+ gg.fillPolygon(new int[] { res*av.charWidth - av.charHeight/4,\r
+ res*av.charWidth + av.charHeight/4,\r
+ res*av.charWidth },\r
+ new int[]\r
+ {\r
+ y-av.charHeight/2 , y-av.charHeight/2 ,\r
+ y + 8\r
+ }, 3);\r
+\r
+\r
+ }\r
+\r
+ if (reveal != null && reveal[0] > startx && reveal[0] < endx)\r
+ {\r
+ gg.drawString("Reveal Columns", reveal[0] * av.charWidth, 0);\r
+ }\r
+ }\r
+\r
+\r
}\r
}\r