JAL-2388 Working hidden regions hide/show in desktop

[jalview.git] / src / jalview / gui / ScalePanel.java

diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java
index bc59f91..90f7cd2 100755 (executable)
--- a/src/jalview/gui/ScalePanel.java
+++ b/src/jalview/gui/ScalePanel.java
@@ -399,10 +399,10 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
 
     res = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(res);
 
-    if (av.getAlignment().getHiddenColumns().getListOfCols() != null)
+    if (av.getAlignment().getHiddenColumns().getHiddenRegions() != null)
     {
       for (int[] region : av.getAlignment().getHiddenColumns()
-              .getListOfCols())
+              .getHiddenRegions())
       {
         if (res + 1 == region[0] || res - 1 == region[1])
         {
@@ -495,9 +495,9 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
       gg.setColor(Color.blue);
       int res;
 
-      if (av.getShowHiddenMarkers() && hidden.getListOfCols() != null)
+      if (av.getShowHiddenMarkers() && hidden.getHiddenRegions() != null)
       {
-        for (int i = 0; i < hidden.getListOfCols()
+        for (int i = 0; i < hidden.getHiddenRegions()
                 .size(); i++)
         {
           res = hidden.findHiddenRegionPosition(i)