ForegroundColor is darker.darker.darker

[jalview.git] / src / jalview / gui / SeqCanvas.java

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index 6639774..27a8a9c 100755 (executable)
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -209,6 +209,7 @@ public class SeqCanvas extends JPanel
 \r
     SequenceI nextSeq;\r
     SequenceGroup group=null;\r
+    SequenceGroup [] groups=null;\r
     boolean inGroup=false; // are we in a defined group?\r
     boolean inRB=false; //Are we in a rubberband group?\r
     int sx=-1, sy=-1, ex=-1, ey=-1;\r
@@ -219,8 +220,9 @@ public class SeqCanvas extends JPanel
      nextSeq = av.getAlignment().getSequenceAt(i);\r
 \r
      group = av.alignment.findGroup( nextSeq );\r
+     groups = av.alignment.findAllGroups( nextSeq );\r
 \r
-     sr.drawSequence(g, nextSeq, group,x1,x2,\r
+     sr.drawSequence(g, nextSeq, groups,x1,x2,\r
                  (x1 - startx) * charWidth,\r
                  offset + AlignmentUtil.getPixelHeight(starty, i, av.getCharHeight()),\r
                  charWidth,charHeight,null, i);\r
@@ -308,7 +310,7 @@ public class SeqCanvas extends JPanel
         int searchStart = searchResults[r+1];\r
         int searchEnd = searchResults[r+2];\r
 \r
-        if (searchSeq >= y1 && searchSeq <= y2)\r
+        if (searchSeq >= y1 && searchSeq < y2)\r
         {\r
           SequenceRenderer ssr = (SequenceRenderer) sr;\r
           ssr.drawHighlightedText(av.getAlignment().getSequenceAt(searchSeq),\r