HiddenColumns hidden = av.getAlignment().getHiddenColumns();
VisibleContigsIterator regions = (VisibleContigsIterator) hidden
- .getVisibleBlocksIterator(startRes, endRes, true);
+ .getVisContigsIterator(startRes, endRes, true);
while (regions.hasNext())
{
HiddenColumns hidden = av.getAlignment().getHiddenColumns();
VisibleContigsIterator regions = (VisibleContigsIterator) hidden
- .getVisibleBlocksIterator(startRes, endRes, true);
+ .getVisContigsIterator(startRes, endRes, true);
while (regions.hasNext())
{
int[] region = regions.next();