JAL-2600 Tidies

[jalview.git] / src / jalview / gui / SeqCanvas.java

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index d7f2679..690d2b1 100755 (executable)
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -21,6 +21,7 @@
 package jalview.gui;
 
 import jalview.datamodel.AlignmentI;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
@@ -169,14 +170,17 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
 
     if (av.hasHiddenColumns())
     {
-      startx = av.getColumnSelection().adjustForHiddenColumns(startx);
-      endx = av.getColumnSelection().adjustForHiddenColumns(endx);
+      startx = av.getAlignment().getHiddenColumns()
+              .adjustForHiddenColumns(startx);
+      endx = av.getAlignment().getHiddenColumns()
+              .adjustForHiddenColumns(endx);
     }
 
     int maxwidth = av.getAlignment().getWidth();
     if (av.hasHiddenColumns())
     {
-      maxwidth = av.getColumnSelection().findColumnPosition(maxwidth) - 1;
+      maxwidth = av.getAlignment().getHiddenColumns()
+              .findColumnPosition(maxwidth) - 1;
     }
 
     // WEST SCALE
@@ -228,7 +232,8 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
 
     if (av.hasHiddenColumns())
     {
-      endx = av.getColumnSelection().adjustForHiddenColumns(endx);
+      endx = av.getAlignment().getHiddenColumns()
+              .adjustForHiddenColumns(endx);
     }
 
     SequenceI seq;
@@ -281,8 +286,6 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
     fastpainting = true;
     fastPaint = true;
     updateViewport();
-    gg.copyArea(horizontal * charWidth, vertical * charHeight, imgWidth,
-            imgHeight, -horizontal * charWidth, -vertical * charHeight);
 
     ViewportRanges ranges = av.getRanges();
     int sr = ranges.getStartRes();
@@ -292,15 +295,17 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
     int transX = 0;
     int transY = 0;
 
+    gg.copyArea(horizontal * charWidth, vertical * charHeight, imgWidth,
+            imgHeight, -horizontal * charWidth, -vertical * charHeight);
+
     if (horizontal > 0) // scrollbar pulled right, image to the left
     {
-      er++;
       transX = (er - sr - horizontal) * charWidth;
       sr = er - horizontal;
     }
     else if (horizontal < 0)
     {
-      er = sr - horizontal - 1;
+      er = sr - horizontal;
     }
     else if (vertical > 0) // scroll down
     {
@@ -519,7 +524,8 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
 
     if (av.hasHiddenColumns())
     {
-      maxwidth = av.getColumnSelection().findColumnPosition(maxwidth) - 1;
+      maxwidth = av.getAlignment().getHiddenColumns()
+              .findColumnPosition(maxwidth) - 1;
     }
 
     while ((ypos <= canvasHeight) && (startRes < maxwidth))
@@ -557,11 +563,11 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
       {
         g.setColor(Color.blue);
         int res;
-        for (int i = 0; i < av.getColumnSelection().getHiddenColumns()
-                .size(); i++)
+        HiddenColumns hidden = av.getAlignment().getHiddenColumns();
+        List<Integer> positions = hidden.findHiddenRegionPositions();
+        for (int pos : positions)
         {
-          res = av.getColumnSelection().findHiddenRegionPosition(i)
-                  - startRes;
+          res = pos - startRes;
 
           if (res < 0 || res > endx - startRes)
           {
@@ -658,13 +664,12 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
     }
     else
     {
-      List<int[]> regions = av.getColumnSelection().getHiddenColumns();
-
       int screenY = 0;
       int blockStart = startRes;
       int blockEnd = endRes;
 
-      for (int[] region : regions)
+      for (int[] region : av.getAlignment().getHiddenColumns()
+              .getHiddenColumnsCopy())
       {
         int hideStart = region[0];
         int hideEnd = region[1];
@@ -983,19 +988,16 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
   @Override
   public void propertyChange(PropertyChangeEvent evt)
   {
-    if (av.getWrapAlignment())
-    {
-
-    }
-    else
+    if (!av.getWrapAlignment())
     {
-      if (evt.getPropertyName().equals("startres")
-              || evt.getPropertyName().equals("endres"))
+      int scrollX = 0;
+      if ((evt.getPropertyName().equals("startres"))
+              || (evt.getPropertyName().equals("endres")))
       {
         // Make sure we're not trying to draw a panel
         // larger than the visible window
         ViewportRanges vpRanges = av.getRanges();
-        int scrollX = (int) evt.getNewValue() - (int) evt.getOldValue();
+        scrollX = (int) evt.getNewValue() - (int) evt.getOldValue();
         if (scrollX > vpRanges.getEndRes() - vpRanges.getStartRes())
         {
           scrollX = vpRanges.getEndRes() - vpRanges.getStartRes();
@@ -1004,13 +1006,26 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
         {
           scrollX = vpRanges.getStartRes() - vpRanges.getEndRes();
         }
+      }
+
+      if (evt.getPropertyName().equals("startres"))
+      {
+        // scroll - startres and endres both change
         fastPaint(scrollX, 0);
       }
-      else if (evt.getPropertyName() == "startseq"
-              || evt.getPropertyName() == "endseq")
+      else if (evt.getPropertyName().equals("endres"))
       {
+        // resize - only endres changes - do nothing
+      }
+      else if (evt.getPropertyName().equals("startseq"))
+      {
+        // scroll
         fastPaint(0, (int) evt.getNewValue() - (int) evt.getOldValue());
       }
+      else if (evt.getPropertyName().equals("endseq"))
+      {
+        // resize - do nothing
+      }
     }
   }
 }