\r
seqEditOccurred = -1;\r
\r
- ap.RefreshPanels();\r
- repaint();\r
+ ap.repaint();\r
\r
}\r
\r
y %= chunkHeight;\r
seq = y / av.getCharHeight() + av.getStartSeq();\r
\r
- // chunkHeight = (da.getHeight() + 2)*charHeight;\r
- // startx += chunkWidth;\r
}\r
else\r
{\r
stretchGroup = sg;\r
\r
if(av.getConservationSelected())\r
- Desktop.setConservationSliderSource(ap, av.getGlobalColourScheme(), "Background");\r
- else if(av.getGlobalColourScheme()!=null && av.getGlobalColourScheme().canThreshold())\r
- {\r
- ResidueColourScheme rcs = (ResidueColourScheme) av.getGlobalColourScheme();\r
- int threshold = rcs.getThreshold();\r
- if (threshold > 0)\r
- Desktop.setPIDSliderSource(ap, av.getGlobalColourScheme(), "Background");\r
- }\r
+ SliderPanel.setConservationSlider(ap, av.getGlobalColourScheme(), "Background");\r
+ if(av.getAbovePIDThreshold())\r
+ SliderPanel.setPIDSliderSource(ap, av.getGlobalColourScheme(), "Background");\r
\r
}\r
else if( javax.swing.SwingUtilities.isRightMouseButton(evt))\r
\r
else if(stretchGroup.cs instanceof ConservationColourScheme)\r
{\r
- ConservationColourScheme ccs = (ConservationColourScheme)stretchGroup.cs;\r
-\r
-\r
+ ConservationColourScheme ccs = (ConservationColourScheme)stretchGroup.cs;\r
stretchGroup.cs = ccs;\r
-\r
-\r
- Desktop.setConservationSliderSource(ap, stretchGroup.cs, stretchGroup.getName()) ;\r
+ SliderPanel.setConservationSlider(ap, stretchGroup.cs, stretchGroup.getName()) ;\r
\r
repaint();\r
}\r
if(stretchGroup.cs !=null && stretchGroup.cs.canThreshold())\r
{\r
ResidueColourScheme rcs = (ResidueColourScheme) stretchGroup.cs;\r
- int threshold = rcs.getThreshold();\r
- if(threshold>0)\r
- Desktop.setPIDSliderSource(ap, stretchGroup.cs, stretchGroup.getName());\r
+ SliderPanel.setPIDSliderSource(ap, stretchGroup.cs, stretchGroup.getName());\r
}\r
\r
}\r
if(stretchGroup==null)\r
return;\r
\r
+ if(res>av.alignment.getWidth()-2)\r
+ res = av.alignment.getWidth()-2;\r
+\r
+\r
if(stretchGroup.getEndRes()==res)\r
// Edit end res position of selected group\r
changeEndRes = true;\r
else if (y < oldSeq)\r
dragDirection = -1;\r
\r
- while (y != oldSeq && oldSeq>0)\r
+ while (y != oldSeq && oldSeq>0 && y<av.alignment.getHeight())\r
{\r
// This routine ensures we don't skip any sequences, as the\r
// selection is quite slow.\r
}\r
else\r
{\r
+ if(seq!=null)\r
stretchGroup.addSequence(seq);\r
stretchGroup.addSequence(nextSeq);\r
}\r