import java.awt.*;
import java.awt.event.*;
+
import javax.swing.*;
import jalview.commands.*;
* @version $Revision$
*/
public class SeqPanel extends JPanel implements MouseListener,
- MouseMotionListener, MouseWheelListener, SequenceListener, SelectionListener
+ MouseMotionListener, MouseWheelListener, SequenceListener,
+ SelectionListener
{
/** DOCUMENT ME!! */
if (tooltipText.length() == 6) // <html></html>
{
setToolTipText(null);
+ lastTooltip = null;
}
else
{
tooltipText.append("</html>");
if (lastTooltip == null
|| !lastTooltip.equals(tooltipText.toString()))
+ {
setToolTipText(tooltipText.toString());
-
- lastTooltip = tooltipText.toString();
+ lastTooltip = tooltipText.toString();
+ }
+
}
+
+ }
+ /* (non-Javadoc)
+ * @see javax.swing.JComponent#getToolTipLocation(java.awt.event.MouseEvent)
+ */
+ public Point getToolTipLocation(MouseEvent event)
+ {
+ int x=event.getX(),w=getWidth();
+ int wdth = (w-x<200) ? -(w/2) : 5; // switch sides when tooltip is too close to edge
+ Point p = (tooltipText!=null && tooltipText.length()>6) ?
+ new Point(event.getX()+wdth, event.getY()-20) : null;
+ /* TODO: try to modify position region is not obcured by tooltip
+ */
+ return p;
}
+
/**
- * appends the features at rpos to the given stringbuffer ready for display in a tooltip
+ * appends the features at rpos to the given stringbuffer ready for display in
+ * a tooltip
+ *
* @param tooltipText2
* @param linkImageURL
* @param rpos
* @param features
- * TODO refactor to Jalview 'utilities' somehow.
+ * TODO refactor to Jalview 'utilities' somehow.
*/
- public static void appendFeatures(StringBuffer tooltipText2, String linkImageURL,
- int rpos, SequenceFeature[] features)
+ public static void appendFeatures(StringBuffer tooltipText2,
+ String linkImageURL, int rpos, SequenceFeature[] features)
{
String tmpString;
if (features != null)
{
tooltipText2.append("<br>");
}
-
- tooltipText2.append(features[i].getType() + " ");
- if (rpos!=0)
- {
- // we are marking a positional feature
- tooltipText2.append(features[i].begin);
- }
- if (features[i].begin != features[i].end)
- {
- tooltipText2.append(" " + features[i].end);
- }
-
- if (features[i].getDescription() != null
- && !features[i].description.equals(features[i]
- .getType()))
+ // TODO: remove this hack to display link only features
+ boolean linkOnly = features[i].getValue("linkonly") != null;
+ if (!linkOnly)
{
- tmpString = features[i].getDescription();
- int startTag = tmpString.toUpperCase().indexOf("<HTML>");
- if (startTag > -1)
- {
- tmpString = tmpString.substring(startTag + 6);
- }
- int endTag = tmpString.toUpperCase().indexOf("</BODY>");
- if (endTag > -1)
+ tooltipText2.append(features[i].getType() + " ");
+ if (rpos != 0)
{
- tmpString = tmpString.substring(0, endTag);
+ // we are marking a positional feature
+ tooltipText2.append(features[i].begin);
}
- endTag = tmpString.toUpperCase().indexOf("</HTML>");
- if (endTag > -1)
+ if (features[i].begin != features[i].end)
{
- tmpString = tmpString.substring(0, endTag);
+ tooltipText2.append(" " + features[i].end);
}
- if (startTag > -1)
+ if (features[i].getDescription() != null
+ && !features[i].description.equals(features[i]
+ .getType()))
{
- tooltipText2.append("; " + tmpString);
- }
- else
- {
- if (tmpString.indexOf("<") > -1
- || tmpString.indexOf(">") > -1)
+ tmpString = features[i].getDescription();
+ int startTag = tmpString.toUpperCase().indexOf("<HTML>");
+ if (startTag > -1)
{
- // The description does not specify html is to
- // be used, so we must remove < > symbols
- tmpString = tmpString.replaceAll("<", "<");
- tmpString = tmpString.replaceAll(">", ">");
-
- tooltipText2.append("; ");
- tooltipText2.append(tmpString);
+ tmpString = tmpString.substring(startTag + 6);
+ }
+ int endTag = tmpString.toUpperCase().indexOf("</BODY>");
+ if (endTag > -1)
+ {
+ tmpString = tmpString.substring(0, endTag);
+ }
+ endTag = tmpString.toUpperCase().indexOf("</HTML>");
+ if (endTag > -1)
+ {
+ tmpString = tmpString.substring(0, endTag);
+ }
+ if (startTag > -1)
+ {
+ tooltipText2.append("; " + tmpString);
}
else
{
- tooltipText2.append("; " + tmpString);
+ if (tmpString.indexOf("<") > -1
+ || tmpString.indexOf(">") > -1)
+ {
+ // The description does not specify html is to
+ // be used, so we must remove < > symbols
+ tmpString = tmpString.replaceAll("<", "<");
+ tmpString = tmpString.replaceAll(">", ">");
+
+ tooltipText2.append("; ");
+ tooltipText2.append(tmpString);
+
+ }
+ else
+ {
+ tooltipText2.append("; " + tmpString);
+ }
}
}
- }
- if (features[i].getScore()!=Float.NaN)
- {
- tooltipText2.append(" Score="+features[i].getScore());
- }
- if (features[i].getValue("status") != null)
- {
- String status = features[i].getValue("status").toString();
- if (status.length() > 0)
+ // TODO: check min/max range for this feature type to decide if
+ // score should be shown
+ if (features[i].getScore() != Float.NaN)
{
- tooltipText2.append("; (" + features[i].getValue("status")
- + ")");
+ tooltipText2.append(" Score=" + features[i].getScore());
+ }
+ if (features[i].getValue("status") != null)
+ {
+ String status = features[i].getValue("status").toString();
+ if (status.length() > 0)
+ {
+ tooltipText2.append("; (" + features[i].getValue("status")
+ + ")");
+ }
}
}
-
if (features[i].links != null)
{
tooltipText2.append(" <img src=\"" + linkImageURL + "\">");
sg.setEndRes(res);
sg.addSequence(sequence, false);
av.setSelectionGroup(sg);
-
+
stretchGroup = sg;
if (av.getConservationSelected())
}
}
}
+
/**
* modify current selection according to a received message.
*/
public void selection(SequenceGroup seqsel, ColumnSelection colsel,
SelectionSource source)
{
- // TODO: fix this hack - source of messages is align viewport, but SeqPanel handles selection messages...
- if (av==source)
+ // TODO: fix this hack - source of messages is align viewport, but SeqPanel
+ // handles selection messages...
+ if (av == source)
{
return;
}
- // do we want to thread this ? (contention with seqsel and colsel locks, I suspect)
- boolean repaint=false;
+ // do we want to thread this ? (contention with seqsel and colsel locks, I
+ // suspect)
+ boolean repaint = false;
if (av.followSelection)
{
- if (av.selectionGroup==null || !av.isSelectionGroupChanged())
+ if (av.selectionGroup == null || !av.isSelectionGroupChanged())
{
- SequenceGroup sgroup = (seqsel!=null) ? seqsel.intersect(av.alignment, (av.hasHiddenRows) ? av.hiddenRepSequences : null)
- : null;
- if (sgroup!=null && sgroup.getSize()>0)
+ SequenceGroup sgroup = (seqsel != null) ? seqsel.intersect(
+ av.alignment, (av.hasHiddenRows) ? av.hiddenRepSequences
+ : null) : null;
+ if (sgroup != null && sgroup.getSize() > 0)
{
av.setSelectionGroup(sgroup);
- } else {
+ }
+ else
+ {
av.setSelectionGroup(null);
}
repaint = av.isSelectionGroupChanged();
}
- if (av.colSel==null || !av.isColSelChanged())
+ if (av.colSel == null || !av.isColSelChanged())
{
// Check to see if the current selection is from a previous message
- if (colsel==null || colsel.size()==0)
+ if (colsel == null || colsel.size() == 0)
{
av.colSel.clear();
- } else {
+ }
+ else
+ {
av.colSel = new ColumnSelection(colsel);
- }
+ }
repaint |= av.isColSelChanged();
}
}
git://source.jalview.org / jalview.git / blobdiff