SequenceGroup is now an array

[jalview.git] / src / jalview / gui / SeqPanel.java

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 9dcebd2..468fadb 100755 (executable)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -333,6 +333,20 @@ public class SeqPanel extends JPanel
             || stretchGroup.getEndRes()<res)\r
      {\r
        stretchGroup = null;\r
+\r
+       SequenceGroup[] allGroups = av.alignment.findAllGroups( (Sequence) av.\r
+           getAlignment().\r
+           getSequenceAt(seq));\r
+\r
+       if (allGroups != null)\r
+         for (int i = 0; i < allGroups.length; i++)\r
+           if (allGroups[i].getStartRes() <= res &&\r
+               allGroups[i].getEndRes() >= res)\r
+           {\r
+             stretchGroup = allGroups[i];\r
+             av.setRubberbandGroup(stretchGroup);\r
+             break;\r
+           }\r
      }\r
 \r
     if(stretchGroup==null)\r