JAL-4134 propagate column selection changes in tree and alignment views

[jalview.git] / src / jalview / gui / SeqPanel.java

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 111b4c0..55f06fc 100644 (file)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -1175,6 +1175,7 @@ public class SeqPanel extends JPanel
     final int column = pos.column;
     final int rowIndex = pos.annotationIndex;
 
+    // TODO - get yOffset for annotation, too
     if (column < 0 || !av.getWrapAlignment() || !av.isShowAnnotation()
             || rowIndex < 0)
     {
@@ -1183,7 +1184,7 @@ public class SeqPanel extends JPanel
     AlignmentAnnotation[] anns = av.getAlignment().getAlignmentAnnotation();
 
     String tooltip = AnnotationPanel.buildToolTip(anns[rowIndex], column,
-            anns);
+            anns, 0, av, ap);
     if (tooltip == null ? tooltip != lastTooltip
             : !tooltip.equals(lastTooltip))
     {
@@ -1194,7 +1195,7 @@ public class SeqPanel extends JPanel
     }
 
     String msg = AnnotationPanel.getStatusMessage(av.getAlignment(), column,
-            anns[rowIndex]);
+            anns[rowIndex], 0, av);
     ap.alignFrame.setStatus(msg);
   }
 
@@ -2930,6 +2931,8 @@ public class SeqPanel extends JPanel
      * if hidden column selection has changed
      */
     ap.paintAlignment(hiddenChanged, hiddenChanged);
+    // propagate any selection changes
+    PaintRefresher.Refresh(ap, av.getSequenceSetId());
 
     return true;
   }