* @param avp DOCUMENT ME!\r
* @param p DOCUMENT ME!\r
*/\r
- public SeqPanel(AlignViewport avp, AlignmentPanel p)\r
+ public SeqPanel(AlignViewport av, AlignmentPanel ap)\r
{\r
linkImageURL = getClass().getResource("/images/link.gif");\r
ToolTipManager.sharedInstance().registerComponent(this);\r
ToolTipManager.sharedInstance().setInitialDelay(0);\r
ToolTipManager.sharedInstance().setDismissDelay(10000);\r
- this.av = avp;\r
+ this.av = av;\r
setBackground(Color.white);\r
\r
- seqCanvas = new SeqCanvas(avp);\r
+ seqCanvas = new SeqCanvas(ap);\r
setLayout(new BorderLayout());\r
add(seqCanvas, BorderLayout.CENTER);\r
\r
- ap = p;\r
+ this.ap = ap;\r
\r
if (!av.isDataset())\r
{\r
continue;\r
}\r
\r
+\r
if ( (features[i].getBegin() <= res) &&\r
(features[i].getEnd() >= res))\r
{\r
ap.alignFrame.addHistoryItem(editCommand);\r
av.firePropertyChange("alignment", null,\r
av.getAlignment().getSequences());\r
+ ap.paintAlignment(true);\r
}\r
\r
startseq = -1;\r
}\r
\r
endEditing();\r
-\r
- ap.paintAlignment(true);\r
}\r
\r
/**\r
SliderPanel.setPIDSliderSource(ap, stretchGroup.cs,\r
stretchGroup.getName());\r
}\r
+ PaintRefresher.Refresh(this, av.getSequenceSetId());\r
+ ap.paintAlignment(true);\r
}\r
+\r
changeEndRes = false;\r
changeStartRes = false;\r
stretchGroup = null;\r
\r
- PaintRefresher.Refresh(this, av.getSequenceSetId());\r
- ap.paintAlignment(true);\r
}\r
\r
/**\r