Merge branch 'develop' into features/JAL-2435splitScreenFont

[jalview.git] / src / jalview / gui / SeqPanel.java

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index ab53c58..7998051 100644 (file)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -59,6 +59,7 @@ import java.awt.event.MouseMotionListener;
 import java.awt.event.MouseWheelEvent;
 import java.awt.event.MouseWheelListener;
 import java.util.ArrayList;
+import java.util.Collections;
 import java.util.List;
 
 import javax.swing.JPanel;
@@ -944,30 +945,36 @@ public class SeqPanel extends JPanel implements MouseListener,
   }
 
   /**
-   * DOCUMENT ME!
-   * 
-   * @param evt
-   *          DOCUMENT ME!
+   * {@inheritDoc}
    */
   @Override
   public void mouseDragged(MouseEvent evt)
   {
     if (mouseWheelPressed)
     {
+      boolean inSplitFrame = ap.av.getCodingComplement() != null;
+      boolean copyChanges = inSplitFrame && av.isProteinFontAsCdna();
+
       int oldWidth = av.getCharWidth();
 
       // Which is bigger, left-right or up-down?
       if (Math.abs(evt.getY() - lastMousePress.getY()) > Math.abs(evt
               .getX() - lastMousePress.getX()))
       {
+        /*
+         * on drag up or down, decrement or increment font size
+         */
         int fontSize = av.font.getSize();
+        boolean fontChanged = false;
 
         if (evt.getY() < lastMousePress.getY())
         {
+          fontChanged = true;
           fontSize--;
         }
         else if (evt.getY() > lastMousePress.getY())
         {
+          fontChanged = true;
           fontSize++;
         }
 
@@ -976,24 +983,56 @@ public class SeqPanel extends JPanel implements MouseListener,
           fontSize = 1;
         }
 
-        av.setFont(
-                new Font(av.font.getName(), av.font.getStyle(), fontSize),
-                true);
-        av.setCharWidth(oldWidth);
-        ap.fontChanged();
+        if (fontChanged)
+        {
+          Font newFont = new Font(av.font.getName(), av.font.getStyle(),
+                  fontSize);
+          av.setFont(newFont, true);
+          av.setCharWidth(oldWidth);
+          ap.fontChanged();
+          if (copyChanges)
+          {
+            ap.av.getCodingComplement().setFont(newFont, true);
+            SplitFrame splitFrame = (SplitFrame) ap.alignFrame
+                    .getSplitViewContainer();
+            splitFrame.adjustLayout();
+            splitFrame.repaint();
+          }
+        }
       }
       else
       {
+        /*
+         * on drag left or right, decrement or increment character width
+         */
+        int newWidth = 0;
         if (evt.getX() < lastMousePress.getX() && av.getCharWidth() > 1)
         {
-          av.setCharWidth(av.getCharWidth() - 1);
+          newWidth = av.getCharWidth() - 1;
+          av.setCharWidth(newWidth);
         }
         else if (evt.getX() > lastMousePress.getX())
         {
-          av.setCharWidth(av.getCharWidth() + 1);
+          newWidth = av.getCharWidth() + 1;
+          av.setCharWidth(newWidth);
+        }
+        if (newWidth > 0)
+        {
+          ap.paintAlignment(false);
+          if (copyChanges)
+          {
+            /*
+             * need to ensure newWidth is set on cdna, regardless of which
+             * panel the mouse drag happened in; protein will compute its 
+             * character width as 1:1 or 3:1
+             */
+            av.getCodingComplement().setCharWidth(newWidth);
+            SplitFrame splitFrame = (SplitFrame) ap.alignFrame
+                    .getSplitViewContainer();
+            splitFrame.adjustLayout();
+            splitFrame.repaint();
+          }
         }
-
-        ap.paintAlignment(false);
       }
 
       FontMetrics fm = getFontMetrics(av.getFont());
@@ -1484,6 +1523,11 @@ public class SeqPanel extends JPanel implements MouseListener,
     }
   }
 
+  /**
+   * Handler for double-click on a position with one or more sequence features.
+   * Opens the Amend Features dialog to allow feature details to be amended, or
+   * the feature deleted.
+   */
   @Override
   public void mouseClicked(MouseEvent evt)
   {
@@ -1502,20 +1546,23 @@ public class SeqPanel extends JPanel implements MouseListener,
               .findFeaturesAtRes(sequence.getDatasetSequence(),
                       sequence.findPosition(findRes(evt)));
 
-      if (features != null && features.size() > 0)
+      if (!features.isEmpty())
       {
+        /*
+         * highlight the first feature at the position on the alignment
+         */
         SearchResultsI highlight = new SearchResults();
         highlight.addResult(sequence, features.get(0).getBegin(), features
                 .get(0).getEnd());
         seqCanvas.highlightSearchResults(highlight);
-      }
-      if (features != null && features.size() > 0)
-      {
-        seqCanvas.getFeatureRenderer().amendFeatures(
-                new SequenceI[] { sequence },
-                features.toArray(new SequenceFeature[features.size()]),
-                false, ap);
 
+        /*
+         * open the Amend Features dialog; clear highlighting afterwards,
+         * whether changes were made or not
+         */
+        List<SequenceI> seqs = Collections.singletonList(sequence);
+        seqCanvas.getFeatureRenderer().amendFeatures(seqs, features, false,
+                ap, null);
         seqCanvas.highlightSearchResults(null);
       }
     }