JAL-1919 code improvement to make PDB sequence fetcher file format configurable....

[jalview.git] / src / jalview / gui / SeqPanel.java

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 4ee87fc..cce2ee0 100644 (file)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -680,7 +680,7 @@ public class SeqPanel extends JPanel implements MouseListener,
        * 
        * @see AlignmentPanel#adjustmentValueChanged
        */
-      ap.setFollowingComplementScroll(true);
+      ap.setDontScrollComplement(true);
       if (ap.scrollToPosition(results, false))
       {
         seqCanvas.revalidate();
@@ -801,6 +801,7 @@ public class SeqPanel extends JPanel implements MouseListener,
    * 
    * @see javax.swing.JComponent#getToolTipLocation(java.awt.event.MouseEvent)
    */
+  @Override
   public Point getToolTipLocation(MouseEvent event)
   {
     int x = event.getX(), w = getWidth();
@@ -1962,7 +1963,7 @@ public class SeqPanel extends JPanel implements MouseListener,
       sgroup = seqsel.intersect(av.getAlignment(),
               (av.hasHiddenRows()) ? av.getHiddenRepSequences() : null);
       if ((sgroup == null || sgroup.getSize() == 0)
-              || (colsel == null || colsel.size() == 0))
+              || (colsel == null || colsel.isEmpty()))
       {
         // don't copy columns if the region didn't intersect.
         copycolsel = false;
@@ -1983,7 +1984,7 @@ public class SeqPanel extends JPanel implements MouseListener,
     {
       // the current selection is unset or from a previous message
       // so import the new colsel.
-      if (colsel == null || colsel.size() == 0)
+      if (colsel == null || colsel.isEmpty())
       {
         if (av.getColumnSelection() != null)
         {