JAL-1803 JAL-2188 experimental:

[jalview.git] / src / jalview / gui / SeqPanel.java

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 9006262..f476d41 100644 (file)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -857,7 +857,8 @@ public class SeqPanel extends JPanel implements MouseListener,
      * Sequence number (if known), and sequence name.
      */
     String seqno = seq == -1 ? "" : " " + (seq + 1);
-    text.append("Sequence" + seqno + " ID: " + sequence.getName());
+    text.append("Sequence").append(seqno).append(" ID: ")
+            .append(sequence.getName());
 
     String residue = null;
     /*
@@ -1970,10 +1971,12 @@ public class SeqPanel extends JPanel implements MouseListener,
 
     // do we want to thread this ? (contention with seqsel and colsel locks, I
     // suspect)
-    // rules are: colsel is copied if there is a real intersection between
-    // sequence selection
+    /*
+     * only copy colsel if there is a real intersection between
+     * sequence selection and this panel's alignment
+     */
     boolean repaint = false;
-    boolean copycolsel = true;
+    boolean copycolsel = false;
 
     SequenceGroup sgroup = null;
     if (seqsel != null && seqsel.getSize() > 0)
@@ -1987,11 +1990,9 @@ public class SeqPanel extends JPanel implements MouseListener,
       }
       sgroup = seqsel.intersect(av.getAlignment(),
               (av.hasHiddenRows()) ? av.getHiddenRepSequences() : null);
-      if ((sgroup == null || sgroup.getSize() == 0)
-              || (colsel == null || colsel.isEmpty()))
+      if ((sgroup != null && sgroup.getSize() > 0))
       {
-        // don't copy columns if the region didn't intersect.
-        copycolsel = false;
+        copycolsel = true;
       }
     }
     if (sgroup != null && sgroup.getSize() > 0)