import jalview.datamodel.SequenceI;
import jalview.fts.core.GFTSPanel;
import jalview.fts.service.pdb.PDBFTSPanel;
+import jalview.fts.service.threedbeacons.TDBeaconsFTSPanel;
import jalview.fts.service.uniprot.UniprotFTSPanel;
import jalview.io.FileFormatI;
import jalview.io.gff.SequenceOntologyI;
frame.dispose();
new UniprotFTSPanel(SequenceFetcher.this);
}
+ else if ("3d-beacons".equalsIgnoreCase(currentSelection))
+ {
+ frame.dispose();
+ new TDBeaconsFTSPanel(SequenceFetcher.this);
+ }
else
{
otherSourceAction();
/*
* tidy inputs and check there is something to search for
*/
- String text = textArea.getText();
- final String t0 = text;
+ String t0 = textArea.getText();
+ String text = t0.trim();
if (replacePunctuation.isEnabled() && replacePunctuation.isSelected())
{
text = text.replace(",", ";");
resetDialog();
return;
}
+ if (database.getSelectedIndex() == 0)
+ {
+ // todo i18n
+ showErrorMessage("Please choose a database");
+ resetDialog();
+ return;
+ }
+
exampleBtn.setEnabled(false);
textArea.setEnabled(false);
okBtn.setEnabled(false);
{
return "Retrieved from " + database.getSelectedItem();
}
-
- AlignmentI parseResult(AlignmentI al, String title,
+ /**
+ * constructs an alignment frame given the data and metadata
+ * @param al
+ * @param title
+ * @param currentFileFormat
+ * @param preferredFeatureColours
+ * @return the alignment
+ */
+ public AlignmentI parseResult(AlignmentI al, String title,
FileFormatI currentFileFormat,
FeatureSettingsModelI preferredFeatureColours)
{