pfam seed and full alignment retrieval and nicer ordering of sequence db sources...

[jalview.git] / src / jalview / gui / SequenceFetcher.java

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index 53f75a4..a66ec2f 100755 (executable)
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -50,7 +50,7 @@ extends JPanel implements Runnable
   StringBuffer result;
   final String noDbSelected = "-- Select Database --";
   Hashtable sources = new Hashtable();
-  private static ASequenceFetcher sfetch=null;
+  private static jalview.ws.SequenceFetcher sfetch=null;
   public SequenceFetcher(IProgressIndicator guiIndic)
   {
       final IProgressIndicator guiWindow = guiIndic;
@@ -69,7 +69,7 @@ extends JPanel implements Runnable
             {
               guiWindow.setProgressBar("Initialising Sequence Database Fetchers", this.hashCode());
             }
-            ASequenceFetcher sf = new jalview.ws.SequenceFetcher();
+            jalview.ws.SequenceFetcher sf = new jalview.ws.SequenceFetcher();
             if ( guiWindow!=null )
             {
               guiWindow.setProgressBar("Initialising Sequence Database Fetchers", this.hashCode());
@@ -102,7 +102,7 @@ extends JPanel implements Runnable
      * and should be collapsed. 
      */
      
-    String dbs[] = sfetch.getSupportedDb();
+    String dbs[] = sfetch.getOrderedSupportedSources();
     for (int i=0; i<dbs.length;i++)
     {
       if (!sources.containsValue(dbs[i]))