selection removed, now SelectionGroup does same job as id select and residue select

[jalview.git] / src / jalview / gui / SequenceRenderer.java

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 5b5a392..442239d 100755 (executable)
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -131,7 +131,10 @@ public class SequenceRenderer implements RendererI
           if(av.getColourText())\r
            {\r
              getBoxColour(av.getGlobalColourScheme(), seq, i);\r
-             graphics.setColor(resBoxColour.darker());\r
+             if(av.getShowBoxes())\r
+              graphics.setColor(resBoxColour.darker());\r
+            else\r
+              graphics.setColor(resBoxColour);\r
            }\r
         }\r
 \r