JAL-2588 Check/fix show boxes settings + unit test updates.

[jalview.git] / src / jalview / gui / SequenceRenderer.java

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 5bb0de7..c27c16b 100755 (executable)
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -95,7 +95,8 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
   public Color getResidueColour(final SequenceI seq, int position,
           FeatureColourFinder finder)
   {
-    return resColourFinder.getResidueColour(av.getResidueShading(),
+    return resColourFinder.getResidueColour(av.getShowBoxes(),
+            av.getResidueShading(),
             allGroups, seq, position,
             finder);
   }