import jalview.renderer.ResidueShaderI;
import jalview.util.MessageManager;
+import java.awt.event.ActionEvent;
import java.awt.event.MouseAdapter;
import java.awt.event.MouseEvent;
import java.beans.PropertyVetoException;
if (forConservation)
{
- label.setText(MessageManager
- .getString("label.enter_value_increase_conservation_visibility"));
+ label.setText(MessageManager.getString(
+ "label.enter_value_increase_conservation_visibility"));
slider.setMinimum(0);
slider.setMaximum(100);
}
else
{
- label.setText(MessageManager
- .getString("label.enter_percentage_identity_above_which_colour_residues"));
+ label.setText(MessageManager.getString(
+ "label.enter_percentage_identity_above_which_colour_residues"));
slider.setMinimum(0);
slider.setMaximum(100);
}
@Override
public void stateChanged(ChangeEvent evt)
{
- valueField.setText(slider.getValue() + "");
+ valueField.setText(String.valueOf(slider.getValue()));
valueChanged(slider.getValue());
}
});
@Override
public void mouseReleased(MouseEvent evt)
{
- ap.paintAlignment(true);
+ ap.paintAlignment(true, true);
}
});
slider.setValue(value);
- valueField.setText(value + "");
+ valueField.setText(String.valueOf(value));
}
/**
else
{
sliderPanel = (SliderPanel) conservationSlider.getContentPane();
- sliderPanel.valueField.setText(String.valueOf(rs.getConservationInc()));
+ sliderPanel.valueField
+ .setText(String.valueOf(rs.getConservationInc()));
sliderPanel.cs = rs;
sliderPanel.ap = ap;
sliderPanel.slider.setValue(rs.getConservationInc());
}
conservationSlider.setTitle(MessageManager.formatMessage(
- "label.conservation_colour_increment",
- new String[] { source == null ? BACKGROUND : source }));
+ "label.conservation_colour_increment", new String[]
+ { source == null ? BACKGROUND : source }));
List<SequenceGroup> groups = ap.av.getAlignment().getGroups();
if (groups != null && !groups.isEmpty())
if (!conservationSlider.isVisible())
{
Desktop.addInternalFrame(conservationSlider,
- conservationSlider.getTitle(), 420, 90, false);
- conservationSlider
- .addInternalFrameListener(new InternalFrameAdapter()
- {
- @Override
- public void internalFrameClosed(InternalFrameEvent e)
- {
- conservationSlider = null;
- }
- });
+ conservationSlider.getTitle(), true, FRAME_WIDTH,
+ FRAME_HEIGHT, false, true);
+ conservationSlider.addInternalFrameListener(new InternalFrameAdapter()
+ {
+ @Override
+ public void internalFrameClosed(InternalFrameEvent e)
+ {
+ conservationSlider = null;
+ }
+ });
conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
}
}
*
* @return
*/
- public static int setPIDSliderSource(AlignmentPanel ap,
- ResidueShaderI rs, String source)
+ public static int setPIDSliderSource(AlignmentPanel ap, ResidueShaderI rs,
+ String source)
{
int threshold = rs.getThreshold();
}
PIDSlider.setTitle(MessageManager.formatMessage(
- "label.percentage_identity_threshold",
- new String[] { source == null ? BACKGROUND : source }));
+ "label.percentage_identity_threshold", new String[]
+ { source == null ? BACKGROUND : source }));
if (ap.av.getAlignment().getGroups() != null)
{
if (!PIDSlider.isVisible())
{
- Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90,
- false);
+ Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), true,
+ FRAME_WIDTH, FRAME_HEIGHT, false, true);
PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
PIDSlider.addInternalFrameListener(new InternalFrameAdapter()
{
}
if (forConservation)
{
- if (!scheme.conservationApplied())
+ if (!scheme.conservationApplied() && sg != null)
{
/*
* first time the colour scheme has had Conservation shading applied
public void setAllGroupsCheckEnabled(boolean b)
{
allGroupsCheck.setEnabled(b);
- allGroupsCheck.setSelected(ap.av.getColourAppliesToAllGroups());
}
/**
static int getValue(JInternalFrame slider)
{
- return slider == null ? 0 : ((SliderPanel) slider.getContentPane())
- .getValue();
+ return slider == null ? 0
+ : ((SliderPanel) slider.getContentPane()).getValue();
}
public static int getPIDValue()