sp = new SliderPanel(ap, value, true, cs);\r
conservationSlider = new JInternalFrame();\r
conservationSlider.setContentPane(sp);\r
+ conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);\r
}\r
else\r
{\r
public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)\r
{\r
SliderPanel pid = null;\r
+\r
+ int threshold = 50;\r
+ if (cs instanceof ResidueColourScheme)\r
+ threshold = ( ( (ResidueColourScheme) cs).getThreshold());\r
+ else if (cs instanceof ScoreColourScheme)\r
+ threshold = ( ( (ScoreColourScheme) cs).getThreshold());\r
+\r
+\r
if(PIDSlider == null)\r
{\r
- pid = new SliderPanel(ap, 50, false, cs);\r
+ pid = new SliderPanel(ap, threshold, false, cs);\r
PIDSlider = new JInternalFrame();\r
PIDSlider.setContentPane(pid);\r
PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);\r
applyButton.setVisible(false);\r
if(forConservation)\r
{\r
- label.setText("Enter the value by which to decrease conservation colour intensity");\r
+ label.setText("Enter value to increase conservation visibility");\r
slider.setMinimum(0);\r
slider.setMaximum(50);\r
}\r
else\r
{\r
- label.setText("Enter the percent identity above which to colour residues");\r
+ label.setText("Enter % identity above which to colour residues");\r
slider.setMinimum(0);\r
slider.setMaximum(100);\r
}\r