Merge branch 'develop' into releases/Release_2_11_2_Branch

[jalview.git] / src / jalview / gui / SplitFrame.java

diff --git a/src/jalview/gui/SplitFrame.java b/src/jalview/gui/SplitFrame.java
index 1fad9ae..7ce8673 100644 (file)
--- a/src/jalview/gui/SplitFrame.java
+++ b/src/jalview/gui/SplitFrame.java
@@ -20,18 +20,6 @@
  */
 package jalview.gui;
 
-import jalview.api.AlignViewControllerGuiI;
-import jalview.api.FeatureSettingsControllerI;
-import jalview.api.SplitContainerI;
-import jalview.controller.FeatureSettingsControllerGuiI;
-import jalview.datamodel.AlignmentI;
-import jalview.jbgui.GAlignFrame;
-import jalview.jbgui.GSplitFrame;
-import jalview.structure.StructureSelectionManager;
-import jalview.util.MessageManager;
-import jalview.util.Platform;
-import jalview.viewmodel.AlignmentViewport;
-
 import java.awt.BorderLayout;
 import java.awt.Component;
 import java.awt.Dimension;
@@ -61,6 +49,18 @@ import javax.swing.event.ChangeListener;
 import javax.swing.event.InternalFrameAdapter;
 import javax.swing.event.InternalFrameEvent;
 
+import jalview.api.AlignViewControllerGuiI;
+import jalview.api.FeatureSettingsControllerI;
+import jalview.api.SplitContainerI;
+import jalview.controller.FeatureSettingsControllerGuiI;
+import jalview.datamodel.AlignmentI;
+import jalview.jbgui.GAlignFrame;
+import jalview.jbgui.GSplitFrame;
+import jalview.structure.StructureSelectionManager;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+import jalview.viewmodel.AlignmentViewport;
+
 /**
  * An internal frame on the desktop that hosts a horizontally split view of
  * linked DNA and Protein alignments. Additional views can be created in linked
@@ -117,9 +117,9 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
      * estimate width and height of SplitFrame; this.getInsets() doesn't seem to
      * give the full additional size (a few pixels short)
      */
-    int widthFudge = Platform.isAMac() ? MAC_INSETS_WIDTH
+    int widthFudge = Platform.isAMacAndNotJS() ? MAC_INSETS_WIDTH
             : WINDOWS_INSETS_WIDTH;
-    int heightFudge = Platform.isAMac() ? MAC_INSETS_HEIGHT
+    int heightFudge = Platform.isAMacAndNotJS() ? MAC_INSETS_HEIGHT
             : WINDOWS_INSETS_HEIGHT;
     int width = ((AlignFrame) getTopFrame()).getWidth() + widthFudge;
     int height = ((AlignFrame) getTopFrame()).getHeight()
@@ -180,26 +180,21 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
    */
   public void adjustLayout()
   {
+    final AlignViewport topViewport = ((AlignFrame) getTopFrame()).viewport;
+    final AlignViewport bottomViewport = ((AlignFrame) getBottomFrame()).viewport;
+
     /*
      * Ensure sequence ids are the same width so sequences line up
      */
-    int w1 = ((AlignFrame) getTopFrame()).getViewport().getIdWidth();
-    int w2 = ((AlignFrame) getBottomFrame()).getViewport().getIdWidth();
+    int w1 = topViewport.getIdWidth();
+    int w2 = bottomViewport.getIdWidth();
     int w3 = Math.max(w1, w2);
-    if (w1 != w3)
-    {
-      ((AlignFrame) getTopFrame()).getViewport().setIdWidth(w3);
-    }
-    if (w2 != w3)
-    {
-      ((AlignFrame) getBottomFrame()).getViewport().setIdWidth(w3);
-    }
+    topViewport.setIdWidth(w3);
+    bottomViewport.setIdWidth(w3);
 
     /*
      * Scale protein to either 1 or 3 times character width of dna
      */
-    final AlignViewport topViewport = ((AlignFrame) getTopFrame()).viewport;
-    final AlignViewport bottomViewport = ((AlignFrame) getBottomFrame()).viewport;
     final AlignmentI topAlignment = topViewport.getAlignment();
     final AlignmentI bottomAlignment = bottomViewport.getAlignment();
     AlignmentViewport cdna = topAlignment.isNucleotide() ? topViewport
@@ -273,7 +268,7 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
     /*
      * estimate ratio of (topFrameContent / bottomFrameContent)
      */
-    int insets = Platform.isAMac() ? MAC_INSETS_HEIGHT
+    int insets = Platform.isAMacAndNotJS() ? MAC_INSETS_HEIGHT
             : WINDOWS_INSETS_HEIGHT;
     // allow 3 'rows' for scale, scrollbar, status bar
     int topHeight = insets + (3 + topCount) * topCharHeight
@@ -819,7 +814,11 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
         if (c != null && c instanceof AlignFrame)
         {
           AlignFrame af = (AlignFrame) c;
-          new Finder(af.viewport, af.alignPanel);
+          boolean dna = af.getViewport().getAlignment().isNucleotide();
+          String scope = MessageManager.getString("label.in") + " "
+                  + (dna ? MessageManager.getString("label.nucleotide")
+                          : MessageManager.getString("label.protein"));
+          new Finder(af.alignPanel, true, scope);
         }
       }
     };
@@ -982,7 +981,7 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
 
     if (showInternalFrame)
     {
-      if (Platform.isAMac())
+      if (Platform.isAMacAndNotJS())
       {
         Desktop.addInternalFrame(featureSettingsUI,
                 MessageManager.getString(