Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons

[jalview.git] / src / jalview / gui / StructureChooser.java

diff --git a/src/jalview/gui/StructureChooser.java b/src/jalview/gui/StructureChooser.java
index 9f9de6e..3ecca9b 100644 (file)
--- a/src/jalview/gui/StructureChooser.java
+++ b/src/jalview/gui/StructureChooser.java
@@ -21,19 +21,23 @@
 
 package jalview.gui;
 
-import java.util.Locale;
-
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
 import java.awt.event.ItemEvent;
 import java.util.ArrayList;
 import java.util.Collection;
 import java.util.HashSet;
 import java.util.LinkedHashSet;
 import java.util.List;
+import java.util.Locale;
 import java.util.concurrent.Executors;
 
 import javax.swing.JCheckBox;
 import javax.swing.JComboBox;
 import javax.swing.JLabel;
+import javax.swing.JMenu;
+import javax.swing.JMenuItem;
+import javax.swing.JPopupMenu;
 import javax.swing.JTable;
 import javax.swing.SwingUtilities;
 import javax.swing.table.AbstractTableModel;
@@ -50,6 +54,7 @@ import jalview.fts.core.FTSDataColumnPreferences;
 import jalview.fts.core.FTSRestRequest;
 import jalview.fts.core.FTSRestResponse;
 import jalview.fts.service.pdb.PDBFTSRestClient;
+import jalview.fts.service.threedbeacons.TDB_FTSData;
 import jalview.gui.structurechooser.PDBStructureChooserQuerySource;
 import jalview.gui.structurechooser.StructureChooserQuerySource;
 import jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource;
@@ -242,13 +247,19 @@ public class StructureChooser extends GStructureChooser
       @Override
       public void run()
       {
+        progressBar.setProgressBar("status.searching_3d_beacons", progressId);
         // TODO: warn if no accessions discovered
         populateSeqsWithoutSourceDBRef();
         // redo initial discovery - this time with 3d beacons
         // Executors.
         previousWantedFields=null;
-        
         initialStructureDiscovery();
+        if (!isStructuresDiscovered())
+        {
+          progressBar.setProgressBar("status.no_structures_discovered_from_3d_beacons", progressId);
+        } else {
+          progressBar.setProgressBar(null, progressId);
+        }
       }
     };
 
@@ -793,6 +804,38 @@ public class StructureChooser extends GStructureChooser
             .setEnabled(selectedCount > 1 || targetView.getItemCount() > 0);
   }
 
+  @Override
+  protected boolean showPopupFor(int selectedRow, int x, int y)
+  {
+    FilterOption selectedFilterOpt = ((FilterOption) cmb_filterOption
+            .getSelectedItem());
+    String currentView = selectedFilterOpt.getView();
+     
+    if (currentView == VIEWS_FILTER && data instanceof ThreeDBStructureChooserQuerySource)
+    {
+      
+      TDB_FTSData row=((ThreeDBStructureChooserQuerySource)data).getFTSDataFor(getResultTable(), selectedRow, discoveredStructuresSet);
+      String pageUrl = row.getModelViewUrl(); 
+      JPopupMenu popup = new JPopupMenu("3D Beacons");
+      JMenuItem viewUrl = new JMenuItem("View model web page");
+      viewUrl.addActionListener(
+              new ActionListener() {
+                @Override
+                public void actionPerformed(ActionEvent e)
+                {
+                  Desktop.showUrl(pageUrl);
+                }
+              }
+              );
+      popup.add(viewUrl);
+      SwingUtilities.invokeLater(new Runnable()  {
+        public void run() { popup.show(getResultTable(), x, y); }
+      });
+      return true;
+    }
+    // event not handled by us
+    return false;
+  }
   /**
    * Validates inputs from the Manual PDB entry panel
    */