.getStructureSummaryFields();
Collection<PDBResponseSummary> filteredResponse = new HashSet<PDBResponseSummary>();
HashSet<String> errors = new HashSet<String>();
+ // try
+ // {
+ // PDBDocField fiterField = PDBRestClient
+ // .getPDBDocFieldByCode(fieldToFilterBy);
+ // if (!wantedFields.contains(fiterField))
+ // {
+ // wantedFields.add(fiterField);
+ // }
+ // } catch (Exception e)
+ // {
+ // e.printStackTrace();
+ // }
+
for (SequenceI seq : selectedSequences)
{
PDBRestRequest pdbRequest = new PDBRestRequest();
- pdbRequest.setAllowEmptySeq(false);
- pdbRequest.setResponseSize(1);
- pdbRequest.setFieldToSearchBy("(");
- pdbRequest.setFieldToSortBy(fieldToFilterBy,
- !chk_invertFilter.isSelected());
- pdbRequest.setSearchTerm(buildQuery(seq) + ")");
- pdbRequest.setWantedFields(wantedFields);
- pdbRequest.setAssociatedSequence(seq);
+ if (fieldToFilterBy.equalsIgnoreCase("uniprot_coverage"))
+ {
+ System.out.println(">>>>>> Filtering with uniprot coverate");
+ pdbRequest.setAllowEmptySeq(false);
+ pdbRequest.setResponseSize(1);
+ pdbRequest.setFieldToSearchBy("(");
+ pdbRequest.setSearchTerm(buildQuery(seq) + ")");
+ pdbRequest.setWantedFields(wantedFields);
+ pdbRequest.setAssociatedSequence(seq);
+ pdbRequest.setFacet(true);
+ pdbRequest.setFacetPivot(fieldToFilterBy + ",entry_entity");
+ pdbRequest.setFacetPivotMinCount(1);
+ }
+ else
+ {
+ pdbRequest.setAllowEmptySeq(false);
+ pdbRequest.setResponseSize(1);
+ pdbRequest.setFieldToSearchBy("(");
+ pdbRequest.setFieldToSortBy(fieldToFilterBy,
+ !chk_invertFilter.isSelected());
+ pdbRequest.setSearchTerm(buildQuery(seq) + ")");
+ pdbRequest.setWantedFields(wantedFields);
+ pdbRequest.setAssociatedSequence(seq);
+ }
pdbRestCleint = new PDBRestClient();
PDBRestResponse resultList;
try
{
cmb_filterOption.addItem(new FilterOption("Best Quality",
PDBDocField.OVERALL_QUALITY.getCode(), VIEWS_FILTER));
- cmb_filterOption.addItem(new FilterOption("Best UniProt Coverage",
+ cmb_filterOption.addItem(new FilterOption("Most UniProt Coverage",
PDBDocField.UNIPROT_COVERAGE.getCode(), VIEWS_FILTER));
- cmb_filterOption.addItem(new FilterOption("Highest Resolution",
+ cmb_filterOption.addItem(new FilterOption("Best Resolution",
PDBDocField.RESOLUTION.getCode(), VIEWS_FILTER));
- cmb_filterOption.addItem(new FilterOption("Highest Protein Chain",
+ cmb_filterOption.addItem(new FilterOption("Most Protein Chain",
PDBDocField.PROTEIN_CHAIN_COUNT.getCode(), VIEWS_FILTER));
- cmb_filterOption.addItem(new FilterOption("Highest Bound Molecules",
+ cmb_filterOption.addItem(new FilterOption("Most Bound Molecules",
PDBDocField.BOUND_MOLECULE_COUNT.getCode(), VIEWS_FILTER));
- cmb_filterOption.addItem(new FilterOption("Highest Polymer Residues",
+ cmb_filterOption.addItem(new FilterOption("Most Polymer Residues",
PDBDocField.POLYMER_RESIDUE_COUNT.getCode(), VIEWS_FILTER));
}
cmb_filterOption.addItem(new FilterOption("Enter PDB Id", "-",