JAL-629 Now showing temp fac and secondary structure for File opened structures and...

[jalview.git] / src / jalview / gui / StructureChooser.java

diff --git a/src/jalview/gui/StructureChooser.java b/src/jalview/gui/StructureChooser.java
index fc73c27..7d2d907 100644 (file)
--- a/src/jalview/gui/StructureChooser.java
+++ b/src/jalview/gui/StructureChooser.java
@@ -1284,7 +1284,8 @@ public class StructureChooser extends GStructureChooser
           String pdbFilename = selectedPdbFileName;
 
           StructureChooser.openStructureFileForSequence(ssm, sc, ap,
-                  selectedSequence, true, pdbFilename, tft, paeFilename);
+                  selectedSequence, true, pdbFilename, tft, paeFilename,
+                  true);
         }
         SwingUtilities.invokeLater(new Runnable()
         {
@@ -1716,17 +1717,19 @@ public class StructureChooser extends GStructureChooser
   public static void openStructureFileForSequence(
           StructureSelectionManager ssm, StructureChooser sc,
           AlignmentPanel ap, SequenceI seq, boolean prompt,
-          String sFilename, TFType tft, String paeFilename)
+          String sFilename, TFType tft, String paeFilename,
+          boolean doXferSettings)
   {
     openStructureFileForSequence(ssm, sc, ap, seq, prompt, sFilename, tft,
-            paeFilename, false, true);
+            paeFilename, false, true, doXferSettings);
   }
 
   public static void openStructureFileForSequence(
           StructureSelectionManager ssm, StructureChooser sc,
           AlignmentPanel ap, SequenceI seq, boolean prompt,
           String sFilename, TFType tft, String paeFilename,
-          boolean forceHeadless, boolean showAnnotations)
+          boolean forceHeadless, boolean showAnnotations,
+          boolean doXferSettings)
   {
     boolean headless = forceHeadless;
     if (sc == null)
@@ -1740,7 +1743,7 @@ public class StructureChooser extends GStructureChooser
 
     PDBEntry fileEntry = new AssociatePdbFileWithSeq().associatePdbWithSeq(
             sFilename, DataSourceType.FILE, seq, prompt, Desktop.instance,
-            tft, paeFilename);
+            tft, paeFilename, doXferSettings);
 
     // if headless, "false" in the sc constructor above will avoid GUI behaviour
     // in sc.launchStructureViewer()