JAL-1942 small tidy (formatting, explict imports, typed list, spelling)

[jalview.git] / src / jalview / gui / StructureChooser.java

diff --git a/src/jalview/gui/StructureChooser.java b/src/jalview/gui/StructureChooser.java
index d924e73..ff856ab 100644 (file)
--- a/src/jalview/gui/StructureChooser.java
+++ b/src/jalview/gui/StructureChooser.java
@@ -35,6 +35,7 @@ import jalview.fts.service.pdb.PDBFTSRestClient;
 import jalview.jbgui.GStructureChooser;
 import jalview.structure.StructureSelectionManager;
 import jalview.util.MessageManager;
+import jalview.ws.DBRefFetcher;
 import jalview.ws.sifts.SiftsSettings;
 
 import java.awt.event.ItemEvent;
@@ -860,31 +861,30 @@ public class StructureChooser extends GStructureChooser implements
         {
           ssm.setProgressBar(null);
           ssm.setProgressBar("Fetching Database refs..");
-          new jalview.ws.DBRefFetcher(sequences, null, null, null, false)
-                  .fetchDBRefs(true);
+          new DBRefFetcher(sequences).fetchDBRefs(true);
           break;
         }
       }
     }
-        if (pdbEntriesToView.length > 1)
-        {
-          ArrayList<SequenceI[]> seqsMap = new ArrayList<SequenceI[]>();
-          for (SequenceI seq : sequences)
-          {
-            seqsMap.add(new SequenceI[] { seq });
-          }
-          SequenceI[][] collatedSeqs = seqsMap.toArray(new SequenceI[0][0]);
+    if (pdbEntriesToView.length > 1)
+    {
+      ArrayList<SequenceI[]> seqsMap = new ArrayList<SequenceI[]>();
+      for (SequenceI seq : sequences)
+      {
+        seqsMap.add(new SequenceI[] { seq });
+      }
+      SequenceI[][] collatedSeqs = seqsMap.toArray(new SequenceI[0][0]);
       ssm.setProgressBar(null);
       ssm.setProgressBar("Fetching PDB Structures for selected entries..");
-          sViewer.viewStructures(pdbEntriesToView, collatedSeqs, alignPanel);
-        }
-        else
-        {
+      sViewer.viewStructures(pdbEntriesToView, collatedSeqs, alignPanel);
+    }
+    else
+    {
       ssm.setProgressBar(null);
       ssm.setProgressBar("Fetching PDB Structure for "
               + pdbEntriesToView[0].getId());
-          sViewer.viewStructures(pdbEntriesToView[0], sequences, alignPanel);
-        }
+      sViewer.viewStructures(pdbEntriesToView[0], sequences, alignPanel);
+    }
   }
 
   /**