Cache.setProperty(Preferences.STRUCTURE_DISPLAY, type.name());
}
- public StructureViewer(StructureSelectionManager structureSelectionManager)
+ public StructureViewer(
+ StructureSelectionManager structureSelectionManager)
{
ssm = structureSelectionManager;
}
}
}
}
- return viewStructures(pdbs[0],
- seqs.toArray(new SequenceI[seqs.size()]), ap);
+ return viewStructures(pdbs[0], seqs.toArray(new SequenceI[seqs.size()]),
+ ap);
}
public JalviewStructureDisplayI viewStructures(PDBEntry pdb,
JalviewStructureDisplayI sview = null;
if (viewerType.equals(ViewerType.JMOL))
{
- sview = new AppJmol(ap, pdbsForFile, ap.av.collateForPDB(pdbsForFile));
+ sview = new AppJmol(ap, pdbsForFile,
+ ap.av.collateForPDB(pdbsForFile));
}
else if (viewerType.equals(ViewerType.CHIMERA))
{
* @param vid
* @return
*/
- public JalviewStructureDisplayI createView(ViewerType type,
- String[] pdbf, String[] id, SequenceI[][] sq,
- AlignmentPanel alignPanel, StructureViewerModel viewerData,
- String fileloc, Rectangle rect, String vid)
+ public JalviewStructureDisplayI createView(ViewerType type, String[] pdbf,
+ String[] id, SequenceI[][] sq, AlignmentPanel alignPanel,
+ StructureViewerModel viewerData, String fileloc, Rectangle rect,
+ String vid)
{
final boolean useinViewerSuperpos = viewerData.isAlignWithPanel();
final boolean usetoColourbyseq = viewerData.isColourWithAlignPanel();
useinViewerSuperpos, viewerColouring, fileloc, rect, vid);
break;
case CHIMERA:
- Cache.log.error("Unsupported structure viewer type "
- + type.toString());
+ Cache.log.error(
+ "Unsupported structure viewer type " + type.toString());
break;
default:
Cache.log.error("Unknown structure viewer type " + type.toString());