JAL-3390 first pass refactoring for JalviewJmolBinding.showStructures

[jalview.git] / src / jalview / gui / StructureViewerBase.java

diff --git a/src/jalview/gui/StructureViewerBase.java b/src/jalview/gui/StructureViewerBase.java
index ec51943..2ffcee1 100644 (file)
--- a/src/jalview/gui/StructureViewerBase.java
+++ b/src/jalview/gui/StructureViewerBase.java
@@ -779,12 +779,6 @@ public abstract class StructureViewerBase extends GStructureViewer
     buildColourMenu();
   }
 
-  @Override
-  public void setJalviewColourScheme(ColourSchemeI cs)
-  {
-    getBinding().setJalviewColourScheme(cs);
-  }
-
   /**
    * Sends commands to the structure viewer to superimpose structures based on
    * currently associated alignments. May optionally return an error message for
@@ -902,7 +896,7 @@ public abstract class StructureViewerBase extends GStructureViewer
       // Set the colour using the current view for the associated alignframe
       for (AlignmentViewPanel avp : _colourwith)
       {
-        binding.colourBySequence(avp);
+        binding.updateStructureColours(avp);
       }
       seqColoursApplied = true;
     }