import jalview.structures.models.AAStructureBindingModel;
import jalview.util.BrowserLauncher;
import jalview.util.MessageManager;
+import jalview.ws.dbsources.EBIAlfaFold;
import jalview.ws.dbsources.Pdb;
/**
{
String filePath = null;
Pdb pdbclient = new Pdb();
+ EBIAlfaFold afclient = new EBIAlfaFold();
AlignmentI pdbseq = null;
String pdbid = processingEntry.getId();
long handle = System.currentTimeMillis()
// { pdbid }));
try
{
- pdbseq = pdbclient.getSequenceRecords(pdbid);
+ if (afclient.isValidReference(pdbid))
+ {
+ pdbseq = afclient.getSequenceRecords(pdbid);
+ } else {
+ pdbseq = pdbclient.getSequenceRecords(pdbid);
+ }
} catch (Exception e)
{
System.err.println(