JAL-1114 - refactor methods handling Vectors and Hashtables to Lists and Maps, and...

[jalview.git] / src / jalview / gui / TextColourChooser.java

diff --git a/src/jalview/gui/TextColourChooser.java b/src/jalview/gui/TextColourChooser.java
index ba9a9f9..1627ab7 100644 (file)
--- a/src/jalview/gui/TextColourChooser.java
+++ b/src/jalview/gui/TextColourChooser.java
@@ -188,16 +188,15 @@ public class TextColourChooser
 
   void setGroupTextColour()
   {
-    if (ap.av.alignment.getGroups() == null)
+    if (ap.av.getAlignment().getGroups() == null)
     {
       return;
     }
 
-    Vector groups = ap.av.alignment.getGroups();
+    
 
-    for (int i = 0; i < groups.size(); i++)
+    for (SequenceGroup sg:ap.av.getAlignment().getGroups())
     {
-      SequenceGroup sg = (SequenceGroup) groups.elementAt(i);
       sg.textColour = ap.av.textColour;
       sg.textColour2 = ap.av.textColour2;
       sg.thresholdTextColour = ap.av.thresholdTextColour;