import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequenceNode;
+import jalview.schemes.Colour;
import jalview.schemes.ColourSchemeI;
import jalview.schemes.ColourSchemeProperty;
import jalview.schemes.ResidueProperties;
import jalview.schemes.UserColourScheme;
import jalview.structure.SelectionSource;
+import jalview.util.ColorUtils;
import jalview.util.Format;
import jalview.util.MappingUtils;
import jalview.util.MessageManager;
}
else
{
- g.setColor(av.getSequenceColour(seq).darker());
+ g.setColor(ColorUtils.getColor(av.getSequenceColour(seq))
+ .darker());
}
}
else
for (int a = 0; a < aps.length; a++)
{
final SequenceI seq = (SequenceI) node.element();
- aps[a].av.setSequenceColour(seq, c);
+ aps[a].av.setSequenceColour(seq, new Colour(c));
}
}
}
codingComplement.getAlignment().addGroup(mappedGroup);
for (SequenceI seq : mappedGroup.getSequences())
{
- codingComplement.setSequenceColour(seq, col.brighter());
+ codingComplement.setSequenceColour(seq,
+ new Colour(col.brighter()));
}
}
}