Merge branch 'develop' into features/JAL-4134_use_annotation_row_for_colours_and_groups

[jalview.git] / src / jalview / gui / TreeCanvas.java

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index b331e60..f6b842d 100755 (executable)
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -1108,7 +1108,6 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
       return false;
     }
     ColumnSelection cs = av.getColumnSelection();
-
     HiddenColumns hc = av.getAlignment().getHiddenColumns();
     int offp = (rseq != null) ? rseq.findIndex(rseq.getStart() + colm)
             : colm;
@@ -1124,7 +1123,6 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
     }
     return false;
   }
-
   private BitSet createColumnGroupFor(Vector<BinaryNode> l, Color col)
   {
     BitSet gp = new BitSet();
@@ -1156,7 +1154,6 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
           Color col)
   {
     SequenceI rseq = tp.assocAnnotation.sequenceRef;
-
     if (av == null || av.getAlignment() == null)
     {
       // alignment is closed
@@ -1175,7 +1172,6 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
         continue;
       }
       // TODO - sort indices for faster lookup
-
       ColumnSelection cs = av.getColumnSelection();
       HiddenColumns hc = av.getAlignment().getHiddenColumns();
       ContactMatrixI cm = av.getContactMatrix(tp.assocAnnotation);