import jalview.analysis.NJTree;
import jalview.analysis.scoremodels.ScoreModels;
-import jalview.api.analysis.DistanceModelI;
+import jalview.api.analysis.ScoreModelI;
import jalview.util.MessageManager;
import java.awt.Color;
matrixNames = new JComboBox<String>();
ScoreModels scoreModels = ScoreModels.getInstance();
- for (DistanceModelI sm : scoreModels.getModels())
+ for (ScoreModelI sm : scoreModels.getModels())
{
boolean nucleotide = af.getViewport().getAlignment().isNucleotide();
if (sm.isDNA() && nucleotide || sm.isProtein() && !nucleotide)
frame.setClosed(true);
String treeType = neighbourJoining.isSelected() ? NJTree.NEIGHBOUR_JOINING
: NJTree.AVERAGE_DISTANCE;
- DistanceModelI sm = ScoreModels.getInstance().forName(
+ ScoreModelI sm = ScoreModels.getInstance().forName(
matrixNames.getSelectedItem().toString());
af.newTreePanel(treeType, sm);
} catch (Exception ex)