JAL-2403 JAL-838 remove unused methods and unneeded public visibility

[jalview.git] / src / jalview / gui / TreePanel.java

diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index 0a33ea8..74dd29a 100755 (executable)
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -160,7 +160,7 @@ public class TreePanel extends GTreePanel
                     .println("new alignment sequences vector value is null");
           }
 
-          tree.UpdatePlaceHolders((List<SequenceI>) evt.getNewValue());
+          tree.updatePlaceHolders((List<SequenceI>) evt.getNewValue());
           treeCanvas.nameHash.clear(); // reset the mapping between canvas
           // rectangles and leafnodes
           repaint();
@@ -367,8 +367,8 @@ public class TreePanel extends GTreePanel
     NewickFile fout = new NewickFile(tree.getTopNode());
     try
     {
-      cap.setText(fout.print(tree.isHasBootstrap(), tree.isHasDistances(),
-              tree.isHasRootDistance()));
+      cap.setText(fout.print(tree.hasBootstrap(), tree.hasDistances(),
+              tree.hasRootDistance()));
       Desktop.addInternalFrame(cap, newTitle, 500, 100);
     } catch (OutOfMemoryError oom)
     {
@@ -406,8 +406,8 @@ public class TreePanel extends GTreePanel
       {
         jalview.io.NewickFile fout = new jalview.io.NewickFile(
                 tree.getTopNode());
-        String output = fout.print(tree.isHasBootstrap(),
-                tree.isHasDistances(), tree.isHasRootDistance());
+        String output = fout.print(tree.hasBootstrap(),
+                tree.hasDistances(), tree.hasRootDistance());
         java.io.PrintWriter out = new java.io.PrintWriter(
                 new java.io.FileWriter(choice));
         out.println(output);