Custom aptx configuration added

[jalview.git] / src / jalview / gui / TreePanel.java

diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index 67ac836..f1ba97b 100755 (executable)
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -35,7 +35,6 @@ import jalview.datamodel.NodeTransformI;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.datamodel.SequenceNode;
-import jalview.ext.archaeopteryx.ArchaeopteryxNewickInit;
 import jalview.io.JalviewFileChooser;
 import jalview.io.JalviewFileView;
 import jalview.io.NewickFile;
@@ -86,6 +85,8 @@ public class TreePanel extends GTreePanel
    * 
    * @param ap
    * @param tree
+   * @param treeType
+   * @param substitutionMatrix
    */
   public TreePanel(AlignmentPanel ap, TreeModel tree, String treeType,
           String substitutionMatrix)
@@ -108,7 +109,6 @@ public class TreePanel extends GTreePanel
    * @param newtree
    * @param theTitle
    * @param inputData
-   * @param viewport
    */
   public TreePanel(AlignmentPanel alignPanel, NewickFile newtree,
           String theTitle, AlignmentView inputData)
@@ -311,8 +311,6 @@ public void buildTreeCanvas(AlignmentPanel ap) {
         sortByTree_actionPerformed();
       }
 
-      ArchaeopteryxNewickInit archae = new ArchaeopteryxNewickInit(tree);
-      archae.startArchaeopteryx();
     }
   }