Enable lower case colours

[jalview.git] / src / jalview / gui / UserDefinedColours.java

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 2369049..a8afd43 100755 (executable)
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -66,6 +66,7 @@ public class UserDefinedColours extends GUserDefinedColours
     public UserDefinedColours(AlignmentPanel ap, SequenceGroup sg)\r
     {\r
         super();\r
+\r
         lcaseColour.setEnabled(false);\r
 \r
         this.ap = ap;\r
@@ -351,7 +352,7 @@ public class UserDefinedColours extends GUserDefinedColours
         if(caseSensitive.isSelected())\r
           button.setMargin(new java.awt.Insets(2,2,2,2));\r
         else\r
-          button.setMargin(new java.awt.Insets(2,14,2,14));\r
+         button.setMargin(new java.awt.Insets(2,14,2,14));\r
 \r
         button.setBackground(col);\r
         button.setText(label);\r
@@ -573,7 +574,7 @@ public class UserDefinedColours extends GUserDefinedColours
               }\r
               else\r
               {\r
-                index = ((Integer)ResidueProperties.aaHash.get(name)).intValue();\r
+                index = ResidueProperties.aaIndex[name.charAt(0)];\r
               }\r
               if(index == -1)\r
                 continue;\r