Use paintAlignment

[jalview.git] / src / jalview / gui / UserDefinedColours.java

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 001b232..d5a9211 100755 (executable)
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -418,7 +418,7 @@ public class UserDefinedColours
     if (seqGroup != null)\r
     {\r
       seqGroup.cs = ucs;\r
-      ap.repaint();\r
+      ap.paintAlignment(true);\r
     }\r
     else if (ap != null)\r
     {\r
@@ -789,7 +789,7 @@ public class UserDefinedColours
       {\r
         ap.av.setGlobalColourScheme(oldColourScheme);\r
       }\r
-      ap.repaint();\r
+      ap.paintAlignment(true);\r
     }\r
 \r
     if (pdbcanvas != null)\r