formatting

[jalview.git] / src / jalview / gui / VamsasApplication.java

diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java
index cd9a529..05024ec 100644 (file)
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -62,7 +62,7 @@ import uk.ac.vamsas.objects.core.Seg;
  * @author jimp
  * 
  */
-public class VamsasApplication implements SelectionSource,VamsasSource
+public class VamsasApplication implements SelectionSource, VamsasSource
 {
   IClient vclient = null;
 
@@ -756,7 +756,7 @@ public class VamsasApplication implements SelectionSource,VamsasSource
       {
         final IPickManager pm = vclient.getPickManager();
         final StructureSelectionManager ssm = StructureSelectionManager
-                .getStructureSelectionManager();
+                .getStructureSelectionManager(Desktop.instance);
         final VamsasApplication me = this;
         pm.registerMessageHandler(new IMessageHandler()
         {
@@ -958,7 +958,8 @@ public class VamsasApplication implements SelectionSource,VamsasSource
 
           int i = -1;
 
-          public void mouseOver(SequenceI seq, int index, VamsasSource source)
+          public void mouseOver(SequenceI seq, int index,
+                  VamsasSource source)
           {
             if (jv2vobj == null)
               return;
@@ -1021,10 +1022,8 @@ public class VamsasApplication implements SelectionSource,VamsasSource
               {
                 String[] vobj = new String[seqsel.getSize()];
                 int o = 0;
-                Enumeration sels = seqsel.getSequences(null).elements();
-                while (sels.hasMoreElements())
+                for (SequenceI sel : seqsel.getSequences(null))
                 {
-                  SequenceI sel = (SequenceI) sels.nextElement();
                   VorbaId v = (VorbaId) jv2vobj.get(sel);
                   if (v != null)
                   {