errorsDuringUpdate = true;
Cache.log.error("Exception synchronizing " + af.getTitle()
+ " "
- + (af.getViewport().viewName == null ? ""
- : " view " + af.getViewport().viewName)
+ + (af.getViewport().getViewName() == null ? ""
+ : " view " + af.getViewport().getViewName())
+ " to document.", e);
stored = false;
}
public void disableGui(boolean b)
{
- Desktop.instance.setVamsasUpdate(b);
+ // JAL-3311 TODO: remove this class!
+ // Desktop.instance.setVamsasUpdate(b);
}
Hashtable _backup_vobj2jv;
{
Iterator<int[]> intervals = hidden
.getVisContigsIterator(seqsel.getStartRes(),
- seqsel.getEndRes() + 1);
+ seqsel.getEndRes() + 1, false);
while (intervals.hasNext())
{
int[] region = intervals.next();