+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
package jalview.gui;
import java.awt.BorderLayout;
import java.util.Map;
import java.util.Vector;
+import javax.swing.InputVerifier;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JComboBox;
import javax.swing.JScrollPane;
import javax.swing.JSlider;
import javax.swing.JSplitPane;
+import javax.swing.JTabbedPane;
import javax.swing.JTable;
import javax.swing.JTextArea;
import javax.swing.JTextField;
import compbio.metadata.ValueConstrain.Type;
import jalview.util.jarInputStreamProvider;
+import jalview.ws.jws2.JabaParamStore;
+import jalview.ws.jws2.JabaPreset;
import jalview.ws.jws2.Jws2Discoverer;
import jalview.ws.jws2.ParameterUtils;
import jalview.ws.jws2.Jws2Discoverer.Jws2Instance;
+import jalview.ws.jws2.dm.JabaOption;
+import jalview.ws.jws2.dm.JabaParameter;
+import jalview.ws.params.ArgumentI;
+import jalview.ws.params.OptionI;
+import jalview.ws.params.ParamDatastoreI;
+import jalview.ws.params.ParameterI;
+import jalview.ws.params.ValueConstrainI;
+import jalview.ws.params.WsParamSetI;
/**
* job parameter editing/browsing dialog box. User can browse existing settings
public class WsJobParameters extends JPanel implements ItemListener,
ActionListener, DocumentListener
{
+ URL linkImageURL = getClass().getResource("/images/link.gif");
+
private static final String SVC_DEF = "Defaults"; // this is the null
// parameter set as shown to
// user
JSplitPane jobPanel = new JSplitPane();
+ boolean split = true;
+
+ JTabbedPane tabpanels = new JTabbedPane();
+
JPanel jobOptions = new JPanel();
JScrollPane jobOptionsPane = new JScrollPane();
JScrollPane paramPane = new JScrollPane();
- // JList paramList = new JList();
JPanel paramList = new JPanel();
RunnerConfig serviceOptions;
- private BorderLayout jparamLayout;
+ ParamDatastoreI paramStore;
WsJobParameters(Jws2Instance service)
{
this(service, null);
}
- public WsJobParameters(Jws2Instance service, Preset p)
+ public WsJobParameters(Jws2Instance service, WsParamSetI preset)
{
- this(null, service, p, null);
+ this(null, service, preset, null);
}
/**
* @param desktop
* - if null, create new JFrame outside of desktop
* @param service
- * @param p
+ * @param preset
*/
- public WsJobParameters(JFrame parent, Jws2Instance service, Preset p,
- List<Argument> jobArgset)
+ public WsJobParameters(JFrame parent, Jws2Instance service,
+ WsParamSetI preset, List<Argument> jobArgset)
+ {
+ this(parent, null, service, preset, jobArgset);
+ }
+
+ /**
+ *
+ * @param parent
+ * @param paramStorei
+ * @param service
+ * @param preset
+ * @param jobArgset
+ */
+ public WsJobParameters(JFrame parent, ParamDatastoreI paramStorei,
+ Jws2Instance service, WsParamSetI preset, List<Argument> jobArgset)
{
super();
jbInit();
+ this.paramStore = paramStorei;
+ if (paramStore == null)
+ {
+ paramStore = service.getParamStore();
+ }
+ this.service = service;
// argSetModified(false);
// populate parameter table
- initForService(service, p, jobArgset);
+ initForService(service, preset, jobArgset);
// display in new JFrame attached to parent.
validate();
}
(int) (deskr.getCenterY() - 250), 480, 500));
frame.setContentPane(this);
// should recover defaults from user prefs.
+ // settingsPanel.setDividerLocation(0.4);
+ // jobPanel.setDividerLocation(0.5);
frame.validate();
- settingsPanel.setDividerLocation(0.4);
- jobPanel.setDividerLocation(0.3);
+ if (split)
+ {
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
+ {
+ public void run()
+ {
+ settingsPanel.setDividerLocation(0.5);
+ jobPanel.setDividerLocation(setDescr.getLineCount() > 3 ? 0.35
+ : 0.16);
+ }
+ });
+ }
+ else
+ {
+ tabpanels.setSelectedComponent(jobOptionsPane);
+ }
frame.setVisible(true);
if (response > 0)
return false;
}
- protected JButton makeButton(String label, String tooltip,
- ActionListener action)
- {
- JButton button = new JButton();
- button.setText(label);
- button.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- button.setForeground(Color.black);
- button.setHorizontalAlignment(SwingConstants.CENTER);
- button.setToolTipText(tooltip);
- button.addActionListener(action);
- return button;
- }
-
private void jbInit()
{
- updatepref = makeButton("Update", "Update the stored user preference",
+ updatepref = JvSwingUtils.makeButton("Update",
+ "Update this existing user parameter set.",
new ActionListener()
{
update_actionPerformed(e);
}
});
- deletepref = makeButton("Delete", "Delete the user preference",
+ deletepref = JvSwingUtils.makeButton("Delete",
+ "Delete the currently selected user parameter set.",
new ActionListener()
{
delete_actionPerformed(e);
}
});
- createpref = makeButton("Create", "Create a new preference",
+ createpref = JvSwingUtils.makeButton("Create",
+ "Create a new parameter set with the current settings.",
new ActionListener()
{
create_actionPerformed(e);
}
});
- revertpref = makeButton("Revert",
- "Undo all changes to the current set", new ActionListener()
+ revertpref = JvSwingUtils.makeButton("Revert",
+ "Undo all changes to the current parameter set",
+ new ActionListener()
{
public void actionPerformed(ActionEvent e)
revert_actionPerformed(e);
}
});
- startjob.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- startjob.setText("Start");
- startjob.setToolTipText("Start Job");
- startjob.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- startjob_actionPerformed(e);
- }
- });
- canceljob.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- canceljob.setText("Cancel");
- canceljob.setToolTipText("Cancel Job");
- canceljob.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- canceljob_actionPerformed(e);
- }
- });
+ startjob = JvSwingUtils.makeButton("Start Job",
+ "Start Job with current settings.", new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ startjob_actionPerformed(e);
+ }
+ });
+ canceljob = JvSwingUtils.makeButton("Cancel Job",
+ "Close this dialog and cancel job.", new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ canceljob_actionPerformed(e);
+ }
+ });
setDetails.setBorder(new TitledBorder("Details"));
setDetails.setLayout(new BorderLayout());
setDescr.setBackground(getBackground());
setDescr.setEditable(true);
setDescr.getDocument().addDocumentListener(this);
+ setDescr.setToolTipText("Click to edit the notes for this parameter set.");
JScrollPane setDescrView = new JScrollPane();
// setDescrView.setPreferredSize(new Dimension(350, 200));
setDescrView.getViewport().setView(setDescr);
setName.setEditable(true);
setName.addItemListener(this);
setName.getEditor().addActionListener(this);
- JPanel setNameInfo=new JPanel(new FlowLayout(FlowLayout.LEFT));
- SetNamePanel.setLayout(new GridLayout(2,1));
+ JPanel setNameInfo = new JPanel(new FlowLayout(FlowLayout.LEFT));
+ SetNamePanel.setLayout(new GridLayout(2, 1));
SetNamePanel.setMinimumSize(new Dimension(300, 40));
- JLabel setNameLabel = new JLabel("Parameter set: ");
+ JLabel setNameLabel = new JLabel("Current parameter set name :");
setNameLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
// setNameLabel.setHorizontalAlignment(FlowLayout.LEFT);
setNameInfo.add(setNameLabel);
createpref.setVisible(false);
JPanel setsavebuts = new JPanel();
setsavebuts.setLayout(new FlowLayout(FlowLayout.LEFT)); // GridLayout(1,2));
- ((FlowLayout)setsavebuts.getLayout()).setHgap(10);
- ((FlowLayout)setsavebuts.getLayout()).setVgap(0);
+ ((FlowLayout) setsavebuts.getLayout()).setHgap(10);
+ ((FlowLayout) setsavebuts.getLayout()).setVgap(0);
setsavebuts.add(deletepref);
setsavebuts.add(revertpref);
setsavebuts.add(createpref);
setsavebuts.add(updatepref);
setsavebuts.setSize(new Dimension(150, 20));
- JPanel buttonArea=new JPanel(new GridLayout(1,1));
+ JPanel buttonArea = new JPanel(new GridLayout(1, 1));
buttonArea.add(setsavebuts);
SetNamePanel.add(setNameInfo);
SetNamePanel.add(buttonArea);
setDetails.add(setDescrView, BorderLayout.CENTER);
// setDetails.setPreferredSize(new Dimension(360, 100));
jobParameters.setBorder(new TitledBorder("Parameters"));
- jobParameters.setLayout(jparamLayout = new BorderLayout());
+ jobParameters.setLayout(new BorderLayout());
paramPane.setPreferredSize(new Dimension(360, 300));
paramPane.getVerticalScrollBar().setUnitIncrement(20);
// paramPanel.setPreferredSize(new Dimension(360, 300));
jobOptionsPanel.setBorder(new TitledBorder("Options"));
jobOptionsPane.getViewport().setView(jobOptions);
jobOptionsPanel.add(jobOptionsPane, BorderLayout.CENTER);
- settingsPanel.setLeftComponent(jobOptionsPanel);
- settingsPanel.setRightComponent(jobParameters);
- settingsPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
setLayout(new BorderLayout());
- // setPreferredSize(new Dimension(400, 600));
- // setSize(new Dimension(400, 600));
jobPanel.setLeftComponent(setDetails);
- jobPanel.setRightComponent(settingsPanel);
+ if (split)
+ {
+ settingsPanel.setLeftComponent(jobOptionsPanel);
+ settingsPanel.setRightComponent(jobParameters);
+ settingsPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
+ jobPanel.setRightComponent(settingsPanel);
+ }
+ else
+ {
+ jobPanel.setRightComponent(tabpanels);
+ jobOptionsPane.setName("Options");
+ tabpanels.add(jobOptionsPane);
+ paramPane.setName("Parameters");
+ tabpanels.add(paramPane);
+ }
jobPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
add(SetNamePanel, BorderLayout.NORTH);
add(jobPanel, BorderLayout.CENTER);
if (isUserPreset)
{
String curname = ((String) setName.getSelectedItem()).trim();
- if (curname.length() > 0 && !curname.equals(lastParmSet))
- {
- _deleteUserPreset(lastParmSet);
- }
- _storeCurrentPreset(curname);
+ _updatePreset(lastParmSet, curname);
lastParmSet = curname;
isUserPreset = true;
initArgSetModified();
}
}
+ private void _deleteUserPreset(String lastParmSet2)
+ {
+ paramStore.deletePreset(lastParmSet2);
+ }
+
protected void delete_actionPerformed(ActionEvent e)
{
if (isUserPreset)
*/
boolean settingDialog = false;
- void initForService(Jws2Instance service, Preset p,
- List<Argument> jobArgset)
+ void initForService(Jws2Instance service, WsParamSetI jabap,
+ List<Argument> jabajobArgset)
{
+ WsParamSetI p = null;
+ List<ArgumentI> jobArgset = null;
settingDialog = true;
- this.service = service;
+ { // instantiate the abstract proxy for Jaba objects
+ jobArgset = jabajobArgset == null ? null : JabaParamStore
+ .getJwsArgsfromJaba(jabajobArgset);
+ p = jabap; // (jabap != null) ? paramStore.getPreset(jabap.getName()) :
+ // null;
+ }
// TODO: Recover window geometry prefs for this service
// jobPanel.setDividerLocation(proportionalLocation)
// settingsPanel.setDividerLocation(proportionalLocation)
{
exnames.put((String) setName.getItemAt(i), setName.getItemAt(i));
}
+ servicePresets = new Hashtable();
// Add the default entry - if not present already.
if (!exnames.contains(SVC_DEF))
{
setName.addItem(SVC_DEF);
exnames.put(SVC_DEF, SVC_DEF);
+ servicePresets.put(SVC_DEF, SVC_DEF);
}
- serviceOptions = service.getRunnerConfig();
- // add any presets not already added.
String curname = (p == null ? "" : p.getName());
- PresetManager prman = service.getPresets();
- servicePresets = new Hashtable();
- if (prman != null)
+ for (WsParamSetI pr : paramStore.getPresets())
{
- List prList = service.getPresets().getPresets();
- if (prList != null)
+ if (!pr.isModifiable())
+ {
+ servicePresets.put(pr.getName(), "preset");
+ }
+ else
{
- for (Object pr : prList)
- {
- servicePresets.put(((Preset) pr).getName(), "preset");
- if (!exnames.contains(((Preset) pr).getName()))
- {
- setName.addItem(((Preset) pr).getName());
- }
- }
+ }
+ if (!exnames.contains(pr.getName()))
+ {
+ setName.addItem(pr.getName());
}
}
// TODO: if initial jobArgset matches a given user setting or preset then
}
@SuppressWarnings("unchecked")
- private void updateTable(Preset p, List<Argument> jobArgset)
+ private void updateTable(WsParamSetI p, List<ArgumentI> jobArgset)
{
- List<Parameter> setargs = new ArrayList<Parameter>();
// populate table from default parameter set.
- List<Argument> args = serviceOptions.getArguments();
+ List<ArgumentI> args = paramStore.getServiceParameters();
// split to params and required arguments
{
- for (Argument arg : args)
+ for (ArgumentI myarg : args)
{
- Argument myarg = (Argument) arg;
// Ideally, Argument would implement isRequired !
- if (myarg instanceof Parameter)
+ if (myarg instanceof ParameterI)
{
- Parameter parm = (Parameter) myarg;
+ ParameterI parm = (ParameterI) myarg;
addParameter(parm);
}
else
{
- if (myarg instanceof Option)
+ if (myarg instanceof OptionI)
{
- Option opt = (Option) myarg;
+ OptionI opt = (OptionI) myarg;
addOption(opt).resetToDefault();
}
else
{
System.err.println("Ignoring unknown service argument type "
- + arg.getClass().getName());
+ + myarg.getClass().getName());
}
}
}
// TODO - URL link
try
{
- args = p.getArguments(serviceOptions);
+ args = p.getArguments();
} catch (Exception e)
{
e.printStackTrace();
}
// TODO: check if args should be unselected prior to resetting using the
// preset
- setargs.clear();
}
else
{
{
isUserPreset = false;
// first call - so create a dummy name
+
setName.setSelectedItem(lastSetName = SVC_DEF);
}
}
// get setargs from current object
if (args != null)
{
- for (Argument arg : args)
+ for (ArgumentI arg : args)
{
- if (arg instanceof Parameter)
+ if (arg instanceof ParameterI)
{
- setParameter((Parameter) arg);
+ setParameter((ParameterI) arg);
}
else
{
- if (arg instanceof Option)
+ if (arg instanceof OptionI)
{
// System.out.println("Setting option "
// + System.identityHashCode(arg) + ":" + arg.getName()
// + " with " + arg.getDefaultValue());
- selectOption((Option) arg, arg.getDefaultValue());
+ selectOption((OptionI) arg, arg.getDefaultValue());
}
}
{
return;
}
-
if (!b)
{
modifiedElements.remove(modifiedElement);
}
else
{
+ if (b && modifiedElement == setName
+ && modifiedElements.contains(modifiedElement))
+ {
+ // HACK! prevents iteration on makeSetNameValid
+ b = false;
+ }
modifiedElements.put(modifiedElement, modifiedElement);
}
// set mod status based on presence of elements in table
boolean stn = settingDialog;
boolean renamed = false;
settingDialog = true;
- String nm = (String) setName.getSelectedItem();
+ String nm = (curSetName != null ? curSetName : (String) setName
+ .getSelectedItem());
// check if the name is reserved - if it is, rename it.
if (isServicePreset(nm))
{
if (newuserset)
{
int i = 0;
- while (_getUserPreset(tnm) != null)
+ while (paramStore.getPreset(tnm) != null)
{
tnm = nm + " (" + (++i) + ")";
- renamed=true;
+ renamed = true;
}
if (i > 0)
{
}
if (renamed)
{
- settingDialog=false; // we need this name change to be registered.
+ settingDialog = false; // we need this name change to be registered.
argSetModified(setName, renamed);
}
settingDialog = stn;
}
- private void addParameter(Parameter parm)
+ private void addParameter(ParameterI arg)
{
- ParamBox pb = paramSet.get(parm.getName());
+ ParamBox pb = paramSet.get(arg.getName());
if (pb == null)
{
- pb = new ParamBox(this, parm);
- paramSet.put(parm.getName(), pb);
+ pb = new ParamBox(this, arg);
+ paramSet.put(arg.getName(), pb);
paramList.add(pb);
}
pb.init();
// take the defaults from the parameter
- pb.updateControls(parm);
+ pb.updateControls(arg);
}
- private void setParameter(Parameter arg)
+ private void setParameter(ParameterI arg)
{
ParamBox pb = paramSet.get(arg.getName());
if (pb == null)
}
- private void selectOption(Option opt, String string)
+ private void selectOption(OptionI option, String string)
{
- OptionBox cb = optSet.get(opt.getName());
+ OptionBox cb = optSet.get(option.getName());
if (cb == null)
{
- cb = addOption(opt);
+ cb = addOption(option);
}
- cb.enabled.setSelected(string!=null); // initial state for an option.
+ cb.enabled.setSelected(string != null); // initial state for an option.
if (string != null)
{
- if (opt.getPossibleValues().contains(string))
+ if (option.getPossibleValues().contains(string))
{
cb.val.setSelectedItem(string);
}
else
{
- throw new Error("Invalid value " + string + " for option " + opt);
+ throw new Error("Invalid value " + string + " for option " + option);
}
}
- if (opt.isRequired() && !cb.enabled.isSelected())
+ if (option.isRequired() && !cb.enabled.isSelected())
{
// TODO: indicate paramset is not valid.. option needs to be selected!
}
JTextField valueField = null;
- ValueConstrain validator = null;
+ ValueConstrainI validator = null;
JPanel settingPanel = new JPanel();
final URL finfo;
- public ParamBox(final WsJobParameters pmlayout, Parameter parm)
+ public ParamBox(final WsJobParameters pmlayout, ParameterI parm)
{
pmdialogbox = pmlayout;
setPreferredSize(new Dimension(PARAM_WIDTH, PARAM_CLOSEDHEIGHT));
finfo = parm.getFurtherDetails();
if (finfo != null)
{
- showDesc.setToolTipText("<html><p>Click to show brief description, and right click to open link for further information.</p></html>");
+ showDesc.setToolTipText("<html>"
+ + JvSwingUtils
+ .wrapTooltip("Click to show brief description<br><img src=\""
+ + linkImageURL
+ + "\"/> Right click for further information.")
+ + "</html>");
showDesc.addMouseListener(this);
}
else
{
- showDesc.setToolTipText("<html><p>Click to show brief description.</p></html>");
+ showDesc.setToolTipText("<html>"
+ + JvSwingUtils
+ .wrapTooltip("Click to show brief description.")
+ + "</html>");
}
showDesc.addActionListener(new ActionListener()
{
boolean adjusting = false;
- Parameter parameter;
+ ParameterI parameter;
JComboBox choicebox;
return (descisvisible ? PARAM_HEIGHT : PARAM_CLOSEDHEIGHT);
}
- public void updateControls(Parameter parm)
+ public void updateControls(ParameterI parm)
{
adjusting = true;
boolean init = (choicebox == null && valueField == null);
Object lastVal;
- public Parameter getParameter()
+ public ParameterI getParameter()
{
- Parameter prm = ParameterUtils.copyParameter(parameter);
- try
+ ParameterI prm = parameter.copy();
+ if (choice)
{
- if (choice)
- {
- prm.setDefaultValue((String) choicebox.getSelectedItem());
- }
- else
- {
- prm.setDefaultValue(valueField.getText());
- }
- } catch (WrongParameterException e)
+ prm.setDefaultValue((String) choicebox.getSelectedItem());
+ }
+ else
{
- e.printStackTrace();
- return null;
+ prm.setDefaultValue(valueField.getText());
}
return prm;
}
{
valueField.setText(valueField.getText().trim());
iVal = Integer.valueOf(valueField.getText());
+ if (validator.getMin() != null
+ && validator.getMin().intValue() > iVal)
+ {
+ iVal = validator.getMin().intValue();
+ // TODO: provide visual indication that hard limit was reached for
+ // this parameter
+ }
+ if (validator.getMax() != null
+ && validator.getMax().intValue() < iVal)
+ {
+ iVal = validator.getMax().intValue();
+ // TODO: provide visual indication that hard limit was reached for
+ // this parameter
+ }
} catch (Exception e)
{
}
try
{
fVal = Float.valueOf(valueField.getText());
+ if (validator.getMin() != null
+ && validator.getMin().floatValue() > fVal)
+ {
+ fVal = validator.getMin().floatValue();
+ // TODO: provide visual indication that hard limit was reached for
+ // this parameter
+ }
+ if (validator.getMax() != null
+ && validator.getMax().floatValue() < fVal)
+ {
+ fVal = validator.getMax().floatValue();
+ // TODO: provide visual indication that hard limit was reached for
+ // this parameter
+ }
} catch (Exception e)
{
}
{
if (javax.swing.SwingUtilities.isRightMouseButton(e))
{
- Desktop.showUrl(finfo.toString());
+ showUrlPopUp(this, finfo.toString(), e.getX(), e.getY());
}
}
JLabel optlabel = new JLabel();
- URL linkImageURL = getClass().getResource("/images/link.gif");
-
final URL finfo;
boolean hasLink = false;
- Option option;
+ OptionI option;
- public OptionBox(Option opt)
+ public OptionBox(OptionI opt)
{
option = opt;
setLayout(new BorderLayout());
{
hasLink = true;
// optlabel.setToolTipText("<html><p>"+opt.getDescription()+"</p><img src=\""+linkImageURL+"\"/></html>");
- enabled.setToolTipText("<html><p>" + opt.getDescription()
- + "</p><img src=\"" + linkImageURL + "\"/></html>");
+ enabled.setToolTipText("<html>"
+ + JvSwingUtils.wrapTooltip(opt.getDescription()
+ + "<br><img src=\"" + linkImageURL + "\"/>")
+ + "</html>");
// optlabel.addMouseListener(this);
enabled.addMouseListener(this);
}
else
{
// optlabel.setToolTipText(opt.getDescription());
- enabled.setToolTipText(opt.getDescription());
+ enabled.setToolTipText("<html>"
+ + JvSwingUtils.wrapTooltip(opt.getDescription())
+ + "</html>");
}
add(enabled, BorderLayout.NORTH);
if (opt.getPossibleValues().size() > 1)
}
}
- public Option getOptionIfEnabled()
+ public OptionI getOptionIfEnabled()
{
if (!enabled.isSelected())
{
return null;
}
- Option opt=null;
- try
- {
- opt = jalview.ws.jws2.ParameterUtils.copyOption(option);
+ OptionI opt = option.copy();
- if (val.getSelectedItem() != null)
- {
- opt.setDefaultValue((String) val.getSelectedItem());
- }
- } catch (WrongParameterException e)
+ if (val.getSelectedItem() != null)
{
- e.printStackTrace();
- return null;
+ opt.setDefaultValue((String) val.getSelectedItem());
}
return opt;
}
if (initVal != null)
{
notmod &= initVal.equals(val.getSelectedItem());
- } else {
+ }
+ else
+ {
// compare against default service setting
- notmod &= option.getDefaultValue()==null || option.getDefaultValue().equals(val.getSelectedItem());
+ notmod &= option.getDefaultValue() == null
+ || option.getDefaultValue().equals(val.getSelectedItem());
}
}
else
}
- private OptionBox addOption(Option opt)
+ private OptionBox addOption(OptionI opt)
{
OptionBox cb = optSet.get(opt.getName());
if (cb == null)
{
FlowLayout fl = new FlowLayout();
paramList.setLayout(fl);
- int s = 2*fl.getVgap();
+ int s = 2 * fl.getVgap();
for (ParamBox pbox : paramSet.values())
{
- s += fl.getVgap()+pbox.getBoxHeight(); // getBoxHeight();
+ s += fl.getVgap() + pbox.getBoxHeight(); // getBoxHeight();
}
paramList.setPreferredSize(new Dimension(PARAM_WIDTH, s));
validate();
}
{
System.out.println("Testing opts dupes for "
- + lastserv.getHost() + " : "
+ + lastserv.getUri() + " : "
+ lastserv.getActionText() + ":" + pr.getName());
List<Option> rg = lastserv.getRunnerConfig().getOptions();
for (Option o : rg)
}
}
}
- WsJobParameters pgui = new WsJobParameters(lastserv, pr);
+ {
+ System.out.println("Testing param write:");
+ List<String> writeparam = null, readparam = null;
+ try
+ {
+ writeparam = jalview.ws.jws2.ParameterUtils
+ .writeParameterSet(
+ pr.getArguments(lastserv.getRunnerConfig()),
+ " ");
+ System.out.println("Testing param read :");
+ List<Option> pset = jalview.ws.jws2.ParameterUtils
+ .processParameters(writeparam,
+ lastserv.getRunnerConfig(), " ");
+ readparam = jalview.ws.jws2.ParameterUtils
+ .writeParameterSet(pset, " ");
+ Iterator<String> o = pr.getOptions().iterator(), s = writeparam
+ .iterator(), t = readparam.iterator();
+ boolean failed = false;
+ while (s.hasNext() && t.hasNext())
+ {
+ String on = o.next(), sn = s.next(), st = t.next();
+ if (!sn.equals(st))
+ {
+ System.out.println("Original was " + on
+ + " Phase 1 wrote " + sn + "\tPhase 2 wrote "
+ + st);
+ failed = true;
+ }
+ }
+ if (failed)
+ {
+ System.out.println("Original parameters:\n"
+ + pr.getOptions());
+ System.out.println("Wrote parameters in first set:\n"
+ + writeparam);
+ System.out.println("Wrote parameters in second set:\n"
+ + readparam);
+
+ }
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ }
+ }
+ WsJobParameters pgui = new WsJobParameters(lastserv,
+ new JabaPreset(lastserv, pr));
JFrame jf = new JFrame("Parameters for "
+ lastserv.getActionText());
JPanel cont = new JPanel();
}
}
- public List<Argument> getJobParams()
+ public List<ArgumentI> getJobParams()
{
- List<Argument> argSet = new ArrayList<Argument>();
+ List<ArgumentI> argSet = new ArrayList<ArgumentI>();
// recover options and parameters from GUI
for (OptionBox opts : optSet.values())
{
- Option opt = opts.getOptionIfEnabled();
+ OptionI opt = opts.getOptionIfEnabled();
if (opt != null)
{
argSet.add(opt);
}
for (ParamBox parambox : paramSet.values())
{
- Parameter parm = parambox.getParameter();
+ ParameterI parm = parambox.getParameter();
if (parm != null)
{
argSet.add(parm);
String lastParmSet = null;
- Hashtable<String, Object[]> editedParams = new Hashtable<String, Object[]>();
-
- /**
+ /*
+ * Hashtable<String, Object[]> editedParams = new Hashtable<String,
+ * Object[]>();
+ *
* store the given parameters in the user parameter set database.
*
- * @param storeSetName
- * - lastParmSet
- * @param descr
- * - setDescr.getText()
- * @param jobParams
- * - getJobParams()
- */
- private void _storeUserPreset(String storeSetName, String descr,
- List<Argument> jobParams)
- {
- // this is a simple hash store.
- Object[] pset;
- editedParams.put(storeSetName, pset = new Object[3]);
- pset[0] = storeSetName;
- pset[1] = descr;
- pset[2] = jobParams;
- // writeParam("Saving " + storeSetName + ": ", jobParams);
- }
-
- private void writeParam(String nm, List<Argument> params)
- {
- for (Argument p : params)
- {
- System.out.println(nm + ":" + System.identityHashCode(p) + " Name: "
- + p.getName() + " Value: " + p.getDefaultValue());
- }
- }
-
- private Object[] _getUserPreset(String setName)
- {
- Object[] pset = editedParams.get(setName);
- // if (pset != null)
- // writeParam("Retrieving " + setName + ": ", (List<Argument>) pset[2]);
- return pset;
- }
-
- /**
- * remove the given user preset from the preset stash
+ * @param storeSetName - lastParmSet
+ *
+ * @param descr - setDescr.getText()
+ *
+ * @param jobParams - getJobParams()
+ *
+ * private void _storeUserPreset(String storeSetName, String descr,
+ * List<ArgumentI> jobParams) { // this is a simple hash store. Object[] pset;
+ * editedParams.put(storeSetName, pset = new Object[3]); pset[0] =
+ * storeSetName; pset[1] = descr; pset[2] = jobParams; // writeParam("Saving "
+ * + storeSetName + ": ", jobParams); }
+ *
+ * private void writeParam(String nm, List<ArgumentI> params) { for (ArgumentI
+ * p : params) { System.out.println(nm + ":" + System.identityHashCode(p) +
+ * " Name: " + p.getName() + " Value: " + p.getDefaultValue()); } }
+ *
+ * private Object[] _getUserPreset(String setName) { Object[] pset =
+ * editedParams.get(setName); // if (pset != null) // writeParam("Retrieving "
+ * + setName + ": ", (List<Argument>) pset[2]); return pset; }
+ *
+ * * remove the given user preset from the preset stash
*
* @param setName
+ *
+ * private void _deleteUserPreset(String setName) {
+ * editedParams.remove(setName); }
*/
- private void _deleteUserPreset(String setName)
- {
- editedParams.remove(setName);
- }
private void syncSetNamesWithStore()
{
while (n < setName.getItemCount())
{
String item = (String) setName.getItemAt(n);
- if (!isServicePreset(item) && _getUserPreset(item) == null)
+ if (!item.equals(SVC_DEF) && !paramStore.presetExists(item))
{
setName.removeItemAt(n);
}
n++;
}
}
- for (String upn : editedParams.keySet())
+ if (!items.contains(SVC_DEF))
{
- if (!items.contains(upn))
+ setName.addItem(SVC_DEF);
+ }
+ for (WsParamSetI upn : paramStore.getPresets())
+ {
+ if (!items.contains(upn.getName()))
{
- setName.addItem(upn);
+ setName.addItem(upn.getName());
}
}
}
{
settingDialog = true;
// updateTable(null,null); // first reset to defaults
- Object[] pset = null;
+ WsParamSetI pset = null;
if (nextPreset != null && nextPreset.length() > 0)
{
- pset = _getUserPreset(nextPreset);
+ pset = paramStore.getPreset(nextPreset);
}
if (pset != null)
{
- isUserPreset = true;
- setDescr.setText((String) pset[1]);
- updateTable(null, (List<Argument>) pset[2]);
- lastParmSet = nextPreset;
- }
- else
- {
- isUserPreset = false;
- setDescr.setText("");
- // must be a default preset from service
- Preset p = null;
- try
+ if (pset.isModifiable())
{
- PresetManager prman = service.getPresets();
- if (prman != null)
- {
- isUserPreset = false;
- p = prman.getPresetByName(nextPreset);
- }
- } catch (Exception ex)
- {
- ex.printStackTrace();
- }
- if (p != null)
- {
- updateTable(p, null);
+ isUserPreset = true;
+ setDescr.setText(pset.getDescription());
+ updateTable(null, pset.getArguments());
lastParmSet = nextPreset;
}
else
{
- updateTable(null, null);
- lastParmSet = SVC_DEF;
+ isUserPreset = false;
+ setDescr.setText("");
+ // must be a default preset from service
+ updateTable(pset, null);
+ lastParmSet = nextPreset;
}
}
+ else
+ {
+ isUserPreset = false;
+ // Service defaults
+ setDescr.setText("");
+ updateTable(null, null);
+ lastParmSet = SVC_DEF;
+ }
+
initArgSetModified();
syncSetNamesWithStore();
setName.setSelectedItem(lastParmSet);
{
if (e.getSource() == setName && e.getStateChange() == e.SELECTED)
{
- String setname = (String) setName.getSelectedItem();
+ final String setname = (String) setName.getSelectedItem();
System.out.println("Item state changed for " + setname
+ " (handling ? " + !settingDialog + ")");
if (settingDialog)
{
return;
}
- // user has selected a different item from combo-box
- if (isModified())
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
{
- String lsetname = (curSetName != null) ? curSetName : lastParmSet;
- if (lsetname.equals(setname)) {
- // setname was just edited - so ignore this event.
- return;
- }
- settingDialog=true;
- System.out.println("Prompting to save " + lsetname);
- if (javax.swing.JOptionPane.showConfirmDialog(this,
- "Parameter set '"+lsetname+"' is modifed\nsave ?", "Save changes ?",
- javax.swing.JOptionPane.OK_CANCEL_OPTION) == JOptionPane.OK_OPTION)
+ public void run()
{
- System.out.println("Saving for " + lsetname);
- _storeCurrentPreset(lsetname);
-
+ doPreferenceComboStateChange(setname);
}
+ });
+ }
+ }
+
+ private void doPreferenceComboStateChange(String setname)
+ {
+ // user has selected a different item from combo-box
+ if (isModified())
+ {
+ String lsetname = (curSetName != null) ? curSetName : lastParmSet;
+ if (lsetname.equals(setname))
+ {
+ // setname was just edited - so ignore this event.
+ return;
}
settingDialog = true;
- reInitDialog(setname);
- settingDialog = false;
+ System.out.println("Prompting to save " + lsetname);
+ if (javax.swing.JOptionPane
+ .showConfirmDialog(
+ this,
+ "Parameter set '"
+ + lsetname
+ + "' is modifed, and your changes will be lost.\nReally change preset ?",
+ "Warning: Unsaved Changes",
+ javax.swing.JOptionPane.OK_CANCEL_OPTION) != JOptionPane.OK_OPTION)
+ {
+ // revert the combobox to the current item
+ settingDialog = true;
+ setName.setSelectedItem(lsetname);
+ settingDialog = false;
+ // and leave.
+ return;
+ // System.out.println("Saving for " + lsetname);
+ // _storeCurrentPreset(lsetname);
+ }
}
+ settingDialog = true;
+ reInitDialog(setname);
+ settingDialog = false;
+
+ }
+
+ private void _renameExistingPreset(String oldName, String curSetName2)
+ {
+ paramStore.updatePreset(oldName, curSetName2, setDescr.getText(),
+ getJobParams());
}
/**
*/
private void _storeCurrentPreset(String curSetName2)
{
- _storeUserPreset(curSetName2, setDescr.getText(), getJobParams());
+ paramStore.storePreset(curSetName2, setDescr.getText(), getJobParams());
+ }
+
+ private void _updatePreset(String lastParmSet2, String curname)
+ {
+ paramStore.updatePreset(lastParmSet2, curname, setDescr.getText(),
+ getJobParams());
+
}
/**
String msg = null;
if (isServicePreset(newname))
{
- JOptionPane.showConfirmDialog(this,
- "Invalid name - preset already exists.", "Invalid name",
- JOptionPane.OK_OPTION);
- // reset name
- setName.setSelectedItem(curSetName);
+ final String oldname = curSetName != null ? curSetName
+ : lastParmSet;
+ final Component ourframe = this;
+ settingDialog = true;
+ setName.getEditor().setItem(oldname);
+ settingDialog = false;
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
+ {
+ public void run()
+ {
+ JOptionPane.showMessageDialog(ourframe,
+ "Invalid name - preset already exists.",
+ "Invalid name", JOptionPane.WARNING_MESSAGE);
+ }
+ });
+
return;
}
curSetName = newname;
{
checkDescrModified();
}
-}
\ No newline at end of file
+
+ /**
+ *
+ * @return null or the service preset selected by the user
+ */
+ public WsParamSetI getPreset()
+ {
+ if (isUserPreset || isModified()
+ || (lastParmSet != null && lastParmSet.equals(SVC_DEF)))
+ {
+ return null;
+ }
+ else
+ {
+ return paramStore.getPreset(lastParmSet);
+ }
+ }
+}
git://source.jalview.org / jalview.git / blobdiff