JAL-2629 JAL-2937 remove redundant is/setHMMConsensusSequence

[jalview.git] / src / jalview / hmmer / HMMAlign.java

diff --git a/src/jalview/hmmer/HMMAlign.java b/src/jalview/hmmer/HMMAlign.java
index befdc55..163e85b 100644 (file)
--- a/src/jalview/hmmer/HMMAlign.java
+++ b/src/jalview/hmmer/HMMAlign.java
@@ -215,7 +215,7 @@ public class HMMAlign extends HmmerCommand
     /*
      * hack to ensure hmm set on alignment
      */
-    if (al.getSequenceAt(0).isHMMConsensusSequence())
+    if (al.getSequenceAt(0).hasHMMProfile())
     {
       al.setHmmConsensus(al.getSequenceAt(0));
     }