import jalview.gui.Preferences;
import jalview.io.DataSourceType;
import jalview.io.FileFormat;
+import jalview.io.FileLoader;
import jalview.util.MessageManager;
import java.io.File;
private boolean runCommand() throws IOException, InterruptedException
{
- File file = new File(cmds.HMMERFOLDER + "/binaries/hmmbuild.exe");
+ File file = new File(cmds.HMMERFOLDER + "/binaries/hmmbuild");
if (!file.canExecute())
{
return false;
private void importData() throws IOException, InterruptedException
{
cmds.addHMMConsensusSequences(af);
- af.loadJalviewDataFile(hmmTemp.getAbsolutePath(), DataSourceType.FILE,
- FileFormat.HMMER3, null);
+ FileLoader loader = new FileLoader();
+ loader.LoadFileOntoAlignmentWaitTillLoaded(af.getViewport(),
+ hmmTemp.getAbsolutePath(), DataSourceType.FILE,
+ FileFormat.HMMER3);
hmmTemp.delete();
stoTemp.delete();
}