import jalview.analysis.SeqsetUtils;
import jalview.analysis.SeqsetUtils.SequenceInfo;
import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
int exitValue = p.exitValue();
if (exitValue != 0)
{
- Cache.log.error("Command failed, return code = " + exitValue);
- Cache.log.error("Command/args were: " + args.toString());
+ Console.error("Command failed, return code = " + exitValue);
+ Console.error("Command/args were: " + args.toString());
}
return exitValue == 0; // 0 is success, by convention
} catch (Exception e)
Cache.getProperty(Preferences.CYGWIN_PATH));
if (bash == null)
{
- Cache.log.error("Cygwin shell not found");
+ Console.error("Cygwin shell not found");
return commands;
}