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[jalview.git]
/
src
/
jalview
/
io
/
AMSAFile.java
diff --git
a/src/jalview/io/AMSAFile.java
b/src/jalview/io/AMSAFile.java
index
12a659d
..
4f21875
100644
(file)
--- a/
src/jalview/io/AMSAFile.java
+++ b/
src/jalview/io/AMSAFile.java
@@
-47,7
+47,7
@@
public class AMSAFile extends jalview.io.FastaFile
for (int i = 0; i < al.getAlignmentAnnotation().length; i++)
\r
{
\r
aa = al.getAlignmentAnnotation()[i];
\r
- if (aa.autoCalculated)
\r
+ if (aa.autoCalculated || !aa.visible)
\r
continue;
\r
\r
out.append(">#_" + aa.label);
\r