/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
protected boolean isValidProteinSequence(String sequence)\r
{\r
for (int i = 0; i < sequence.length(); i++)\r
- if (!jalview.schemes.ResidueProperties.aaHash.containsKey(\r
- String.valueOf(sequence.charAt(i))))\r
+ if (jalview.schemes.ResidueProperties.aaIndex[sequence.charAt(i)]==-1)\r
{\r
invalidCharacter = sequence.charAt(i);\r
return false;\r