Merge branch 'develop' into features/filetypeEnum

[jalview.git] / src / jalview / io / AlignFile.java

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index d36a588..d333c64 100755 (executable)
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -370,8 +370,8 @@ public abstract class AlignFile extends FileParse implements AlignmentFileI
   }
 
   /**
-   * Creates the output id. Adds prefix Uniprot format source|id And suffix
-   * Jalview /start-end
+   * Creates the output id. Adds prefix Uniprot format source|id and optionally
+   * suffix Jalview /start-end
    * 
    * @param jvsuffix
    * 
@@ -382,6 +382,11 @@ public abstract class AlignFile extends FileParse implements AlignmentFileI
     return seq.getDisplayId(jvsuffix);
   }
 
+  String printId(SequenceI seq)
+  {
+    return printId(seq, true);
+  }
+
   /**
    * vector of String[] treeName, newickString pairs
    */