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[jalview.git] / src / jalview / io / AlignFile.java

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index 1ec2805..f933961 100755 (executable)
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -39,7 +39,6 @@ public abstract class AlignFile extends FileParse
     Vector headers;\r
     long start;\r
     long end;\r
-    boolean dbPrefix = true;\r
     boolean jvSuffix = true;\r
 \r
     /**\r
@@ -152,20 +151,13 @@ public abstract class AlignFile extends FileParse
      */\r
     public abstract String print();\r
 \r
-    public void addDBPrefix(boolean b)\r
-    {\r
-      dbPrefix = b;\r
-    }\r
-\r
     public void addJVSuffix(boolean b)\r
     {\r
       jvSuffix = b;\r
     }\r
 \r
     /**\r
-     * A general parser for ids. Will look for dbrefs in\r
-     * Uniprot format source|id\r
-     * And also Jalview /start-end\r
+     * A general parser for ids.\r
      *\r
      * @String id Id to be parsed\r
      */\r
@@ -184,7 +176,6 @@ public abstract class AlignFile extends FileParse
         seq = new Sequence(id, "");\r
       }\r
 \r
-\r
       return seq;\r
     }\r
 \r
@@ -197,7 +188,7 @@ public abstract class AlignFile extends FileParse
      */\r
     String printId(SequenceI seq)\r
     {\r
-      return seq.getDisplayId(dbPrefix, jvSuffix);\r
+     return seq.getDisplayId(jvSuffix);\r
     }\r
 \r
 }\r