fixed introduced bug (doh)

[jalview.git] / src / jalview / io / AnnotationFile.java

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index 04861a2..77f8810 100755 (executable)
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -101,17 +101,17 @@ public class AnnotationFile
         if(row.annotations[j]!=null)\r
         {\r
           comma = "";\r
-          if (row.annotations[j].displayCharacter.length() > 0\r
-              && !row.annotations[j].displayCharacter.equals(" "))\r
-          {\r
-            text.append(row.annotations[j].displayCharacter);\r
-            comma = ",";\r
-          }\r
           if (row.annotations[j].secondaryStructure!=' ')\r
           {\r
             text.append(comma + row.annotations[j].secondaryStructure);\r
             comma = ",";\r
           }\r
+          if (row.annotations[j].displayCharacter.length() > 0 \r
+                  && !row.annotations[j].displayCharacter.equals(" "))\r
+              {\r
+                text.append(comma + row.annotations[j].displayCharacter);\r
+                comma = ",";\r
+              }\r
           if (row.annotations[j].value!=0f)\r
           {\r
             color = row.annotations[j].colour;\r