JAL-841; Structure trigger token in jalview.io.Alignmentfile extended

[jalview.git] / src / jalview / io / AnnotationFile.java

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index d4284a2..f1a7caf 100755 (executable)
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -1018,7 +1018,7 @@ public class AnnotationFile
         }\r
       }\r
       if (hasSymbols\r
-              && (token.equals("H") || token.equals("E") || token\r
+              && (token.equals("H") || token.equals("E") || token.equals("S") || token\r
                       .equals(" ")))\r
       {\r
         // Either this character represents a helix or sheet\r