private AlignmentI buildAlignmentFrom(AlignFile alignFile2)
{
// Standard boilerplate for creating alignment from parser
- alignFile.configureForView(viewpanel);
+ // alignFile.configureForView(viewpanel);
AlignmentI al = new Alignment(alignFile.getSeqsAsArray());
{
throw new Exception(MessageManager.getString("error.implementation_error_unknown_file_format_string"));
}
+
afile.setNewlineString(newline);
afile.addJVSuffix(jvsuffix);