Fixed some broken tests

[jalview.git] / src / jalview / io / AppletFormatAdapter.java

diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index f97a341..41fac7f 100755 (executable)
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -299,8 +299,7 @@ public class AppletFormatAdapter
 
       al = new Alignment(afile.getSeqsAsArray());
 
-      // afile.addAnnotations(al);
-      // afile.addSeqGroups(al);
+      afile.addAnnotations(al);
 
       return al;
     } catch (Exception e)
@@ -433,6 +432,7 @@ public class AppletFormatAdapter
         afile = new HtmlFile(source);
       }
       al = new Alignment(afile.getSeqsAsArray());
+      afile.addAnnotations(al);
 
       return al;
     } catch (Exception e)